PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g023530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 187aa    MW: 20852.5 Da    PI: 6.3487
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g023530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.53.2e-2651041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C+vl++ C ++C++  yfp+++  +f+ v+++ Ga+n+ ++l++l+ e+ +++a++sl+y A+ar rdPv+G +g++++ ++ l+ +++++
  Csa11g023530.1   5 RCAICRVLKQICDPNCIYKAYFPSND-TRFKDVNQIIGAENIANILNSLESEDqHKIAANSLCYAADARRRDPVSGILGMVQHHESILNDVEQDI 98 
                     6**********************998.89********************766648999************************************9 PP

          DUF260  95 allkee 100
                     + +++e
  Csa11g023530.1  99 KFAENE 104
                     998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.7614105IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-245101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNSSRCAICR VLKQICDPNC IYKAYFPSND TRFKDVNQII GAENIANILN SLESEDQHKI  60
AANSLCYAAD ARRRDPVSGI LGMVQHHESI LNDVEQDIKF AENELKTNVG PDQVPKYFDI  120
PIQDGFLTTS TSLNSYIEEI KRLTTVAKNQ HMQLLKREDQ KMDDGKIIND ASTSAGPSAT  180
LPKKHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1631059111LOB family transfactor Ramosa2.1
5ly0_B2e-1631059111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g023530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086254.11e-112PREDICTED: LOB domain-containing protein 32-like
SwissprotO496513e-58LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0GTP61e-82R0GTP6_9BRAS; Uncharacterized protein
STRINGXP_010445199.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.11e-60LOB domain-containing protein 32