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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa11g021130.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
ERF |
| Protein Properties |
Length: 351aa MW: 38160.8 Da PI: 5.5084 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g021130.1 | genome | CSGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 58.8 | 1.3e-18 | 117 | 167 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++++GVr+++ +g+W+AeIrdp + r r +lg++ taeeAa ++ a+ +l+g
Csa11g021130.1 117 KKFRGVRQRP-WGKWAAEIRDPLK---RVRLWLGTYNTAEEAAMVYDSAAIQLRG 167
59********.**********754...5*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MCSAALKSLF FFLVIVPDLT NNHQTRVLRI SVTDPYATDS SSDDEDEDEA HNNRFVSKRR 60
RIKKFVNEVV LDSGGAAVAN IETETESKKR KMIAVKSEST ASPVVSATTT TTVTGEKKFR 120
GVRQRPWGKW AAEIRDPLKR VRLWLGTYNT AEEAAMVYDS AAIQLRGPDA LTNFSVTPTT 180
TTTTTAEKKS PPPLKKKKKT TKKKNSKTKN SVTASSTISG SSSNDCLCSP VSVLRSPFTV 240
DEFSGSSSPP AVAAAVVVKE EPSMTTVSET FSDFSAPLFS DDDLFDFRSS VVPHYLGGGD 300
LFGEDLFTVD MCTDMNFGFD FGSSGLSSWQ MEDHFQDIGD LFGSDPLLAV *
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 57 | 61 | KRRRI |
| 2 | 194 | 203 | KKKKKTTKKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ckurshumova W,Berleth T
Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
Plant Signal Behav, 2015. 10(7): p. e993293
[PMID:26098229] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
Plant J., 2016. 85(1): p. 134-47
[PMID:26662515] - Jeon J,Cho C,Lee MR,Van Binh N,Kim J
CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
Plant Cell, 2016. 28(8): p. 1828-43
[PMID:27432872]
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