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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g019130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18678.9 Da PI: 10.0521 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++g+ly+++s Csa11g019130.1 9 KRIENVTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQNGRLYDFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 46 | 2.2e-16 | 83 | 143 | 9 | 69 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 +e+ ++l++e+a + +ie Lq R+++G+dL+ +s++eL++L q+eksl+ +Rs+K Csa11g019130.1 83 RKEQYVQELKKEMAVMMHKIEHLQLHCRKVMGQDLDLCSVEELKELTIQIEKSLTIVRSRK 143 578889******************999*********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.539 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-31 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.02E-39 | 3 | 70 | No hit | No description |
PRINTS | PR00404 | 9.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.7E-14 | 87 | 143 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.3 | 88 | 158 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MLRGKIEIKR IENVTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ NGRLYDFASS 60 DMKKIMERYE IYRREAFGEE RLRKEQYVQE LKKEMAVMMH KIEHLQLHCR KVMGQDLDLC 120 SVEELKELTI QIEKSLTIVR SRKGFSEGLS YCERFKSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 3e-20 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-20 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-20 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-20 | 3 | 72 | 2 | 71 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g019130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189309 | 4e-59 | AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445133.1 | 4e-98 | PREDICTED: MADS-box protein AGL71-like | ||||
Swissprot | Q9FLH5 | 1e-62 | AGL72_ARATH; MADS-box protein AGL72 | ||||
TrEMBL | R0F2Y0 | 5e-89 | R0F2Y0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010445133.1 | 1e-97 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8805 | 12 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51860.2 | 2e-65 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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