 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa11g018210.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
HRT-like |
| Protein Properties |
Length: 313aa MW: 34764.7 Da PI: 9.1652 |
| Description |
HRT-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g018210.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HRT-like | 55.2 | 1.2e-17 | 107 | 136 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30
+CGv+ledG+ C ++P+kgRKRC eHKG+R
Csa11g018210.1 107 VCGVLLEDGTACITTPIKGRKRCTEHKGKR 136
7****************************9 PP
|
| 2 | HRT-like | 47.4 | 3.3e-15 | 162 | 192 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31
iCGvil d C+r+Pv RKRCe HKGmR+
Csa11g018210.1 162 ICGVILPDMVRCRRPPVLRRKRCEDHKGMRV 192
8*****************************7 PP
|
| 3 | HRT-like | 31.3 | 3.4e-10 | 232 | 259 | 2 | 29 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGm 29
C +++++G +C+r + g KRC++HK++
Csa11g018210.1 232 CEATTNNGLPCTRRASTGSKRCWQHKDK 259
9*************************96 PP
|
| 4 | HRT-like | 45.8 | 1e-14 | 279 | 304 | 1 | 26 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26
iCGv+l +GsvC++ P kgRKRCe H
Csa11g018210.1 279 ICGVKLYNGSVCEKAPLKGRKRCENH 304
8************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MATLGQTESI KYRLRSFGRS IVHRDLLKKL GDTPRKSGLS QTILPITQKK AVNKTEENKH 60
DLAEEREISS DAAEKESNLL LSPSKLQPVS DRHSHDDLVD GSDSASVCGV LLEDGTACIT 120
TPIKGRKRCT EHKGKRLSRV SPVKLIPCEV PTRRECQETD DICGVILPDM VRCRRPPVLR 180
RKRCEDHKGM RVNAFFFLLS PTERDEAVKE DKSKPKTCTG MNQEDSGLNL LCEATTNNGL 240
PCTRRASTGS KRCWQHKDKT VDHGSSSENV QSATTSQVIC GVKLYNGSVC EKAPLKGRKR 300
CENHILKFKA LE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL049171 | 0.0 | AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project). |
| GenBank | AL049483 | 0.0 | AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project). |
| GenBank | AL161564 | 0.0 | AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64. |
| GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
