 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa11g016750.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
NAC |
| Protein Properties |
Length: 302aa MW: 33367.2 Da PI: 8.9533 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g016750.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.8 | 1.8e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrF Ptdeel+v+yL++kv+g +++l +vi ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s
Csa11g016750.1 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITS- 106
79***************************9.99***************8777899***********************************9999. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
Csa11g016750.1 107 DGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 139
999****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP 60
SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITSDGRR VGIKKALVFY 120
AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY KKTSGSQRQA ASAATPVQAC 180
REEHSTNGSS SSSSSQLDDV LDSFPEIKDQ SFNLPRMNSL RTILNGNFDW ASLAGLNPIP 240
ELAPTNGLPS YGGYDSFRAA EGEAESGLRN SHVDNSGGLT QSFGYSSSGF GVSGQTFGFR 300
Q*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-107 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF083738 | 0.0 | AF083738.1 Arabidopsis thaliana clone sps433 unknown mRNA. |
| GenBank | AY087772 | 0.0 | AY087772.1 Arabidopsis thaliana clone 38344 mRNA, complete sequence. |
