PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 294aa MW: 33701.4 Da PI: 6.1722

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g015760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	142	192	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g+ Csa11g015760.1 142 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 192 59**999.******954...4************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.17E-34	141	201	No hit	No description
SuperFamily	SSF54171	4.9E-23	142	200	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.67	142	199	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.5E-32	142	200	IPR001471	AP2/ERF domain
SMART	SM00380	6.2E-38	142	205	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	143	154	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-13	143	192	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	165	181	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDFDEELNLC ITKGKSIDHS LGEASSTSPR SMKKMKSPPN RPKPYLQSSS SPYSLGAFPF 60 YLDPTMQNQQ HQFGSYVPVE QQYDPTMQGQ KQMISFSPQQ QQQQQQQQYL VRYWRDTLNL 120 SPRGRMMMMN QEGVQPYSAT KLYRGVRQRQ WGKWVAEIRK PRSRARLWLG TFDTAEEAAM 180 AYDRQAFKLR GHNATLNFPE HFVNMENEVH DSNSSPHQKQ DETPQPSEVN LESKEVAVAD 240 NEREEGMAEA WYNAVTSGWG PESALWDDLD SSHQFSESSS SSSSLSCPMR PFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-21	141	199	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00458	DAP	Transfer from AT4G28140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g015760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010438499.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF054-like
Swissprot	Q9M0J3	1e-163	ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBL	R0GTC6	1e-168	R0GTC6_9BRAS; Uncharacterized protein
STRING	XP_010438499.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2141	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28140.1	1e-153	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]