PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Csa11g014910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 159aa MW: 17909.4 Da PI: 6.2679

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g014910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	58.2	1.8e-18	1	157	129	290
GRAS 129 lqaLa...sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrllde 216 +q+La R++ + s+++T v++p s+ ++ el+ t+e+L+ fA e++vpfe+++l + l +l ++ L++++ +Ea+a nl ++ Csa11g014910.1 1 MQELAsgrRRRNRASSFKLTDVAPPPSTisDEFELRFTEENLKTFAGEVKVPFEIELLSIELLLNLAYWPLSLRSseKEAIAMNLPINSGVSG-- 93 899995423448899*******999999************************999****999988668899999988655544.. PP GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 l+ + ++L+ ++s +++ e+ + +++F + +++al+y+++l++sl+a+ +++ ++++Er+++ Csa11g014910.1 94 --YLPL-ILRFLNKSHQTS----SFAQTEVVTVTARFPNVVIHALQYHTTLLESLDAN---QNQGDSSIERFWV 157 ..3333.224555555554....589999999***********************9...7899999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.259	1	158	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-16	1	157	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MQELASGRRR RNRASSFKLT DVAPPPSTIS DEFELRFTEE NLKTFAGEVK VPFEIELLSI 60 ELLLNLAYWP LSLRSSEKEA IAMNLPINSG VSGYLPLILR FLNKSHQTSS FAQTEVVTVT 120 ARFPNVVIHA LQYHTTLLES LDANQNQGDS SIERFWVR*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g014910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254605	1e-154	AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_182041.1	5e-73	GRAS family transcription factor
Swissprot	Q7XJM8	4e-74	SCL27_ARATH; Scarecrow-like protein 27
TrEMBL	A0A384KUR0	1e-71	A0A384KUR0_ARATH; LOM1
TrEMBL	B7ZWR8	1e-71	B7ZWR8_ARATH; At2g45160
STRING	AT2G45160.1	2e-72	(Arabidopsis thaliana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45160.1	4e-62	GRAS family protein

Publications ? help Back to Top
Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Takanashi H, et al. miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis. Plant Mol. Biol., 2018. 96(6): p. 627-640 [PMID:29574557]