PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g012430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 476aa    MW: 52146.1 Da    PI: 6.056
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g012430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.21.1e-25175231259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk+ + +rsYYrCt+++C +kk +e+s++ +kvvei+++g H he
  Csa11g012430.1 175 RDGYNWRKYGQKQVKSPKGSRSYYRCTYSECFAKK-IECSNDSGKVVEIVNKGLHSHE 231
                     7********************************98.*********************8 PP
2WRKY98.44.4e-31338395259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ e++++v+itY+g Hnh+
  Csa11g012430.1 338 GDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVENTTAVIITYKGVHNHD 395
                     5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-20171233IPR003657WRKY domain
SuperFamilySSF1182908.5E-20171233IPR003657WRKY domain
SMARTSM007747.5E-24174232IPR003657WRKY domain
PROSITE profilePS5081116.972176233IPR003657WRKY domain
PfamPF031065.5E-17176230IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-32322397IPR003657WRKY domain
PROSITE profilePS5081132.156332397IPR003657WRKY domain
SuperFamilySSF1182904.05E-27333397IPR003657WRKY domain
SMARTSM007743.6E-35337396IPR003657WRKY domain
PfamPF031068.7E-24339395IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEDSGIPEVF YAAENSTANN TEKSEKVAPE KELDNGMSQL RDDDESLATI GEDMYDLHDE  60
PVQETLDKDQ VEGVLENSSV EPNGEDVKEM DTVKEIVVSA IVPVDEVEED REVETSPCLT  120
ASSDSLTVKP SLSSDPASAA QGLSPVSIPT KQEQRSDSPV VNRLSVSPVP RTPARDGYNW  180
RKYGQKQVKS PKGSRSYYRC TYSECFAKKI ECSNDSGKVV EIVNKGLHSH EPPRKNSFAP  240
REIRVASAIR PISENNAVVK EPTIVPNGSD PAASTRENIC EPQTFVERKR HCGNEAVDEP  300
EAKRRVKKEN SQSSDSVSKP GKKNKFVVHA AGDVGICGDG YRWRKYGQKM VKGNPHPRNY  360
YRCTSAGCPV RKHIETAVEN TTAVIITYKG VHNHDMPVPK KRHGPPSSML VAAAAPTSMR  420
TRTDDQVNIP TSSQCSVGRE SEKKQSSEAL DVVGGEKVME SARTLLSIGF EIKQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-25324397174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g012430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040860.0BT004086.1 Arabidopsis thaliana clone RAFL15-37-C10 (R20909) putative WRKY family transcription factor (At4g30935) mRNA, complete cds.
GenBankBT0051100.0BT005110.1 Arabidopsis thaliana clone U20909 putative WRKY family transcription factor (At4g30935) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438103.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595830.0WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLR0GNC40.0R0GNC4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010438103.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63382844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.10.0WRKY DNA-binding protein 32