PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 530aa MW: 59840.3 Da PI: 5.7476

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g007300.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.2	1.4e-08	334	371	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + Csa11g007300.1 334 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 371 664459******************************88 PP
2	BELL	127.9	3.7e-41	200	271	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi Csa11g007300.1 200 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 271 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	9.4E-71	135	269	IPR006563	POX domain
Pfam	PF07526	6.6E-48	141	268	IPR006563	POX domain
PROSITE profile	PS50071	11.758	312	375	IPR001356	Homeobox domain
SMART	SM00389	1.0E-8	315	379	IPR001356	Homeobox domain
CDD	cd00086	1.24E-10	315	376	No hit	No description
SuperFamily	SSF46689	1.54E-16	316	381	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-26	318	380	IPR009057	Homeodomain-like
Pfam	PF05920	1.0E-17	332	371	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MENYPETQFL PGNAMIHMNA TVSYSEEFAS RERTEANNNV SASQERSRFG QVSQMQDVDQ 60 DFDSWRDQAS DRNGFQLMSA MAGATTAHLH TGQGLSLSLG SQIHPGIHQS MAPRAEHCRG 120 KEYAIQSFPG GNQNFDVLRT IPNSMYLKAA QQLLDEAVNV RKALKQFQAE GDKNNEKPQE 180 TDQNTQDSST NPPAEISQSE RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA 240 GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVIRKCLGE QQDGSDGKRV GMISRLKYVD 300 QHLRQQRGFI QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ 360 VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKR PATDDDEDRA QEFSQDHTKQ 420 DQGHDGYGEE TCGMVQGSQM DSRRFMAVEP TYHVAEMSRL GRGDVSLTLG LQNSNGHDNV 480 TVMSSEAYNN FSGVDIFENA IPGTELEYIN PGSRQNRISS SQLVHDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MENYPETQFL PGNAMIHMNA TVSYSEEFAS RERTEANNNV SASQERSRFG QVSQMQDVDQ  60
DFDSWRDQAS DRNGFQLMSA MAGATTAHLH TGQGLSLSLG SQIHPGIHQS MAPRAEHCRG  120
KEYAIQSFPG GNQNFDVLRT IPNSMYLKAA QQLLDEAVNV RKALKQFQAE GDKNNEKPQE  180
TDQNTQDSST NPPAEISQSE RQEMQSKLTK LLSMLDEVDR RYKQYYQQMQ IVVSSFDVIA  240
GYGAAKPYTA LALQTISRHF RSLRDAISGQ ILVIRKCLGE QQDGSDGKRV GMISRLKYVD  300
QHLRQQRGFI QPQAWRPQRG LPENSVLILR AWLFEHFLHP YPKDSDKIML ARQTGLSRGQ  360
VSNWFINARV RLWKPMVEEI YKEEFTENDS NSSSENTPKR PATDDDEDRA QEFSQDHTKQ  420
DQGHDGYGEE TCGMVQGSQM DSRRFMAVEP TYHVAEMSRL GRGDVSLTLG LQNSNGHDNV  480
TVMSSEAYNN FSGVDIFENA IPGTELEYIN PGSRQNRISS SQLVHDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-14	321	379	5	63	Homeobox protein Meis2
3k2a_B	1e-14	321	379	5	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g007300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT012291	0.0	BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437584.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
Refseq	XP_010437585.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
Refseq	XP_019088842.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
Swissprot	O65685	0.0	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	R0F3V1	0.0	R0F3V1_9BRAS; Uncharacterized protein
STRING	XP_010437584.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2869	25	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	0.0	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]