PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g006520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 966aa    MW: 107539 Da    PI: 6.2559
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g006520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.81.1e-28641691252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Csa11g006520.1 641 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 691
                     799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.041630711IPR003035RWP-RK domain
PfamPF020421.1E-24644691IPR003035RWP-RK domain
SuperFamilySSF542778.69E-24858950No hitNo description
Gene3DG3DSA:3.10.20.2405.0E-25862946No hitNo description
PROSITE profilePS5174529.794864947IPR000270PB1 domain
SMARTSM006661.8E-28864947IPR000270PB1 domain
PfamPF005643.3E-18866946IPR000270PB1 domain
CDDcd064072.08E-41866946No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MEGGGGGGGD GSFLPNSSFG VFSETAMDMD FMEELFYDGC WLETTDGKSL KQTLGQQVSD  60
STTMSDNNNN SFLYGYQFAE NPSQDHISNE ETGRKFPPIT PGFLKIEDLS NQPLNQVPFD  120
QSAAMSSAQA EKFLLEETEG GRRWWIAPRT SQGPSSSVKD RLVQAIKGLM QDKDFLIQIW  180
VPIQQEGKNF LTTLEQPHFF NPKYLSLKRY RDVSVAYNFP AHEDSTESVG LPGRVFLGKL  240
PEWTPDVRFF RSDEYPRIKE AEKCDVRGSL ALPVFERGSG TCLGVVEIVT TTQKMNYRPE  300
LDNICKALES VNLRSSRNLK SPSREFLQVY NEFYYAALPE VSEFLTWVCR LYDLPLALTW  360
APCARQGKVG SRHSDENFSE CVSTVDDACI VPDHQSRNFL EACSEHHLLQ GEGIVGKAFK  420
ATKLFFVPEV ITFSKTNYPL AHHAKISGLH AALAVPLKSK FNGSVEFVLE FFFPKTCLDT  480
EAQQDMLKSL SVTLQQDFRS LNLVIDKELE LEVVFPVREE VVFGETGENM KPLPLEEISQ  540
EDSSWISHMI KANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNQIGSGHS NFISETDQFQ  600
KVSNSGLRID MDPSFESASF GVGQTLLGSR RPGEKRRTKT EKTIGLEVLR QYFAGSLKDA  660
AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGVQG SIQLDSFYTS  720
FPELSSPHMS GTGTTFKNTD QSRNVTAQTE NGVSAQGTAA AAPKSPPSSS CSHSSGSSTC  780
CSTGANQSSN TGNTSNTVTT LMAENASAIL KRARSEVRLH TMNQEETKSL SRTLSHKTFS  840
EHPLFENLPR LPESNRRKLK AEGASKVKAT FGEAKVRFTL LPTWGFRELQ HEIARRFNID  900
NIAPFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQN KLGGSFGSIG  960
LGPSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g006520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226040.0AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBankAL1615870.0AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437496.10.0PREDICTED: protein NLP2
RefseqXP_010437497.10.0PREDICTED: protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLR0GGQ70.0R0GGQ7_9BRAS; Uncharacterized protein
STRINGXP_010437496.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein