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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa11g006210.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
NAC |
| Protein Properties |
Length: 505aa MW: 56484.8 Da PI: 5.0637 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g006210.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 142.5 | 2.5e-44 | 1 | 113 | 15 | 127 |
NAM 15 vveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
v++yL+ k++g++ ++ +vi+++d++k+ePwdLp+ +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++s k++l+g+kktLv
Csa11g006210.1 1 VNHYLRLKINGRHSDV-RVIPDIDVCKWEPWDLPAlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKS-KKTLIGMKKTLV 93
789**********999.99***************4447888889**************************************.999********* PP
NAM 108 fykgrapkgektdWvmheyr 127
fy+grapkge+t+W+mheyr
Csa11g006210.1 94 FYRGRAPKGERTNWIMHEYR 113
*******************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 505 aa
Download sequence Send
to blast |
VNHYLRLKIN GRHSDVRVIP DIDVCKWEPW DLPALSVIKT DDPEWFFFCP RDRKYPNGHR 60
SNRATDSGYW KATGKDRSIK SKKTLIGMKK TLVFYRGRAP KGERTNWIMH EYRPTLKDLD 120
GTGPGQSPFV LCRLFHKPDD RVNGVKSDEP APTSCKYSPD DTSSDLVQET PSSDAAVEKP 180
SDYSGGCGYA QSMADGSMTE VREENLWLSC DLEDQRALPP RMDSTYAGDF GYDEIGFQFQ 240
DGTSEPDVSL TELLEEVFNN PDDFSCEESI SRENPVAPNG IFSSDKMLQS AAPEDVYFND 300
FMAYTDADAE MVQLQYGLDH GASGWPKDAV SAYPATTNSY YGDILQPDQV TSHNTENNVT 360
EGRGIKIRGR QPQNRSSTGL INQGIAPRRI RLQVHSSSVP PDDKNQIEAK QREEVNEGLT 420
DIPEDKEVAA KDSERSDSVV KPQIKLRTRG TIGQVKADRV ADDEVQVESR RRRREGKQWK 480
LVATVIVAVM VGVGVGMWRK LVGS*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-35 | 3 | 137 | 33 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-35 | 3 | 137 | 33 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-35 | 3 | 137 | 33 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-35 | 3 | 137 | 33 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 4e-35 | 3 | 137 | 36 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 4e-35 | 3 | 137 | 33 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 4e-35 | 3 | 137 | 33 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL031135 | 1e-161 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). |
| GenBank | AL161587 | 1e-161 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. |
| GenBank | CP002687 | 1e-161 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
