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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa11g005420.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
SRS |
| Protein Properties |
Length: 324aa MW: 34564.6 Da PI: 6.5738 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g005420.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 224.4 | 2.2e-69 | 92 | 249 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsst 89
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + ++ +kr+r++ + ++ss+
Csa11g005420.1 92 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsggtggGSSIPKRHRDT--TLPGTSSSS 184
67899*****************************************************99988877789998888889999986..888899999 PP
DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+l+s ++ e+ +s+P evss+a+frcv++s vddg+ ++aYqt+v+igGh+fkGiLydqG+e+
Csa11g005420.1 185 RLPSDSAGLEMGEASFPGEVSSDALFRCVKMSDVDDGDGQYAYQTTVNIGGHLFKGILYDQGPES 249
***************************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MAGIFSLGGN NNNNNGDEEE ENQQQQKTNW IWYRPNANTN NINPSSSQQI WQIPPEQMLM 60
HHHPHPQQQQ QQSLDLYPGH QIDVSDLATS SRSITISCRD CGNQAKKDCT HMRCRTCCKS 120
RGFDCSTHVR STWIPVARRR ERQQQLHMST SGGGGGSGSG GTGGGSSIPK RHRDTTLPGT 180
SSSSRLPSDS AGLEMGEASF PGEVSSDALF RCVKMSDVDD GDGQYAYQTT VNIGGHLFKG 240
ILYDQGPESS YMSAGSGGSD HQSSSAGGGG GNPFNPPIVA DGGGGVSSAM FVDPNSGGYY 300
SSNMTTSVFM PPGTQFYQNP PRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G36260.1 | 1e-158 | Lateral root primordium (LRP) protein-related |
