PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g004520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 288aa MW: 31321.7 Da PI: 5.9959 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.5 | 1.4e-35 | 12 | 103 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SF+RQLn+YgF+k+ ++ weF++++F++g ++ll++ Csa11g004520.1 12 FLSKTYQLVDDHNTDDVVSWNEDGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDYFRRGGEDLLSD 97 9***************************************************************9999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+ks Csa11g004520.1 98 IRRRKS 103 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-37 | 4 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.1E-58 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.18E-33 | 9 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.6E-32 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MTAAQRSVPA PFLSKTYQLV DDHNTDDVVS WNEDGTAFVV WKTAEFAKDL LPQYFKHNNF 60 SSFIRQLNTY GFRKTVPDKW EFANDYFRRG GEDLLSDIRR RKSVIAGKCV VAGGGSTPSE 120 SNSGVGGGGD DHGSSSTSSP GSSKNPGSVE NMVADLSGEN EKLKRENNSL SSELAAAKKQ 180 RDELVTFLTD HLKVKPEQID QMIKGGGKFK PVLESDEEES SDCEGCGGGG ADEGVGEGLK 240 LFGVWLKGER KKRGRDENNY VVGGSHMTEL KNVDFHAPLW KSSKVCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdk_A | 4e-25 | 8 | 103 | 7 | 112 | Heat shock factor protein 2 |
5hdk_B | 4e-25 | 8 | 103 | 7 | 112 | Heat shock factor protein 2 |
5hdk_C | 4e-25 | 8 | 103 | 7 | 112 | Heat shock factor protein 2 |
5hdk_D | 4e-25 | 8 | 103 | 7 | 112 | Heat shock factor protein 2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g004520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161590 | 1e-130 | AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86. | |||
GenBank | ATU68017 | 1e-130 | U68017.1 Arabidopsis thaliana heat shock transcription factor 4 (AtHSF4) mRNA, complete cds. | |||
GenBank | AY120760 | 1e-130 | AY120760.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds. | |||
GenBank | BT003369 | 1e-130 | BT003369.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds. | |||
GenBank | CP002687 | 1e-130 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | JX112029 | 1e-130 | JX112029.1 Arabidopsis thaliana truncated heat shock factor B1 mRNA, complete cds, alternatively spliced. | |||
GenBank | Y14069 | 1e-130 | Y14069.1 Arabidopsis thaliana mRNA for heat shock factor 4. | |||
GenBank | Z99707 | 1e-130 | Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437260.1 | 0.0 | PREDICTED: heat stress transcription factor B-1 | ||||
Swissprot | Q96320 | 1e-161 | HSFB1_ARATH; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A3P5ZH61 | 1e-160 | A0A3P5ZH61_BRACM; Uncharacterized protein | ||||
STRING | XP_010437260.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-143 | heat shock factor 4 |