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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa11g004450.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
bHLH |
| Protein Properties |
Length: 359aa MW: 38414.4 Da PI: 6.5716 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa11g004450.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 50.9 | 2.8e-16 | 185 | 231 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq
Csa11g004450.1 185 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 231
6*************************7.....5******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MGDKKLISSS SSSSSIYDTR NHHHQPPPSS SSDEISLFLR HIFDRSSPNL PSYYSPATTA 60
TTMIGVHGDP HADNSRCFVS DAAAAALMSS KRVGDFSEVL VGGSSAVGSA STAACFGFNN 120
SNAQGNSSGT TRVSSSSVGA SGNETDEYDC ESEEGGEAVV DEAPSSKSGG PPSRSSSKRC 180
RAAEVHNLSE KRRRSRINEK MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLTMR 240
NGINLHPLCL PGTTLHPLQL SQIRPPEATN DPMLNHTNQF ASTSNAPEMI NTVASSYALE 300
PSIRSHFGPF PLLTPPVEMN REGGLTHQRL NIGHSNTNLT GEQAVFDGQQ PDLKDRLT*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF319540 | 0.0 | AF319540.1 Arabidopsis thaliana SPATULA (SPT) mRNA, complete cds. |
| GenBank | AK229267 | 0.0 | AK229267.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (AtbHLH024) / SPATULA (SPT), complete cds, clone: RAFL16-54-P05. |
| GenBank | BT026462 | 0.0 | BT026462.1 Arabidopsis thaliana At4g36930 mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Moubayidin L,Ostergaard L
Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development.
Curr. Biol., 2014. 24(22): p. 2743-8
[PMID:25455035] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development.
Mol. Biol. Evol., 2017. 34(4): p. 925-942
[PMID:28087776] - Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
Evodevo, 2017. 8: p. 5
[PMID:28331573] - Reyes-Olalde JI, et al.
The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium.
PLoS Genet., 2017. 13(4): p. e1006726
[PMID:28388635] - Wu M, et al.
SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis.
Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385
[PMID:29966653]
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