PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g004440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 499aa MW: 55365.4 Da PI: 8.4412 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.8e-17 | 198 | 247 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Csa11g004440.1 198 SQYRGVTFYRSTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 247 78*******************......55************************997 PP | |||||||
2 | AP2 | 42.9 | 1.2e-13 | 290 | 340 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Csa11g004440.1 290 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 340 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-9 | 198 | 247 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-16 | 198 | 256 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.438 | 199 | 255 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-17 | 199 | 255 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-32 | 199 | 261 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-11 | 199 | 256 | No hit | No description |
Pfam | PF00847 | 3.2E-9 | 290 | 340 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-17 | 290 | 350 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.00E-26 | 290 | 350 | No hit | No description |
PROSITE profile | PS51032 | 15.672 | 291 | 348 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 291 | 348 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-32 | 291 | 354 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 292 | 303 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 330 | 350 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
LLFISLSLLI LSLFFIFYFL PTKSFLLFGF SYLASNLEEN QTRGLKSLKT FQNINPKKKK 60 KMWDLNDSPH QTLREEESEE FCYSSPSKRV GSFSNSSSSA VVIEDGSDDD EPNRVRPNNN 120 NPLVTHQFFP EMDSNGVVGD GGGGSGFPRA HWFGVKFCQS DLATGSSTGK ATTVAATAVV 180 EPAQPLKKSR RGPRSRSSQY RGVTFYRSTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR 240 AAIKFRGVEA DINFNIEDYD DDLKQMTNLT KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC 300 GRWEARMGQF LGKKYVYLGL FDTEVEAARA YDKAAIKCNG KDAVTNFDPS IYDEELNAES 360 SGNPTPQDHN LDLSLGNSAN SKQKSQDMRL KMTQQQQDLH SNEILGLGQT GMLNHIPNSN 420 HQYPGSSNIG NGGGFSLFPG AENHRFDGRA STNQVLTNAA ASSGFSPHHH NQIYNSSSTS 480 HQNWLQTNGF QPPLMRPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g004440.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU12546 | 0.0 | U12546.1 Arabidopsis thaliana Columbia homeotic APETALA2 protein (APETALA2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437250.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2 | ||||
Swissprot | P47927 | 0.0 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A178UZG8 | 0.0 | A0A178UZG8_ARATH; FLO2 | ||||
STRING | XP_010437250.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 0.0 | AP2 family protein |