PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g002100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 602aa MW: 66975.7 Da PI: 4.3674 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3e-08 | 443 | 484 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r rW++++ el++++++++G++ + I + ++ +Rt++q k+++ Csa11g002100.1 443 RTRWSKQDTELFYEGIREFGSN-LSMIQHLFP-NRTREQMKLKF 484 78******************99.*********.******99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 5.4E-23 | 436 | 520 | No hit | No description |
SuperFamily | SSF46689 | 8.22E-9 | 437 | 491 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.697 | 441 | 492 | IPR017884 | SANT domain |
SMART | SM00717 | 3.0E-7 | 442 | 490 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 443 | 484 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-5 | 445 | 485 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MDLDFDDHPS HHAAPAVRAG TRFKPKGRPQ PKKKQVSFST SQTTLPTNVA KETLSTRSQE 60 GSVSLDGSSA IPSEALPSES NVPESGTINQ STIETLSEEN VNVVSREVHW STEASVLRAC 120 NHVDLGGKRC DDSIEAAASA FPDDPRTQDS TIFGDSETGE DDGHLDMETL DIVQEEGTTS 180 SYVQHTGKLQ PKPRVLDTVV EEEPEPHYSV DGTGYFSMGS NESEVMDNVE SRNDFSTYGH 240 LQEEEPNIQE EEPNIPEAPR ETVPETEAQN ASGRSDNNTG TGEEENCLGN NTLEEEQSGR 300 GKKKGKSKKA TGRKRKNKSE EAPREKTEKK FKHSSRRQKR TLDKELLETP DDEIRSLPIR 360 DMLRLVEYKE WLEKKEAKGV AVVPPTQESD MNASGNASGS QYDSQGFDAE DEFGMEENEN 420 QEAYVVKPDS PVNYQTYMYK TARTRWSKQD TELFYEGIRE FGSNLSMIQH LFPNRTREQM 480 KLKFKLEERR YPLKLNEALA TRPKQLIHFP NVIKKLQEEA AAAKAAEGGV EGEEEVGAEA 540 ETNDVPQNEE PEKPEETERA SDAVDGVKES DGGDGVRSDG GDECDNDEGD DDFWNSYKSD 600 M* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 315 | KKKGKSKKATGRKRK |
2 | 312 | 338 | RKRKNKSEEAPREKTEKKFKHSSRRQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g002100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437020.1 | 0.0 | PREDICTED: transcription factor TFIIIB component B''-like | ||||
TrEMBL | R0GHJ6 | 0.0 | R0GHJ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010437020.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5154 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 0.0 | MYB_related family protein |