PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g001790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 547aa    MW: 59766.9 Da    PI: 6.9962
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g001790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.58.1e-10399455561
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                     kr +r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l++
  Csa11g001790.1 399 KRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMIGLTN 455
                     899*****************************************9999877665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-19395459IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.68397460IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11399455No hitNo description
PfamPF001701.4E-8399450IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-11399456No hitNo description
CDDcd147039.54E-24400449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGDTEKCSNT TDHMIHRLHS SLGTSSSSIP KHASSPIHQQ QLDLNPNFLR SSTTTTPQFS  60
NCAKRIGVPP SHPNLIPPPT SPFSQIPTSR QQPSSLHSHS RSLSQPNSFF SFDSLPPLSP  120
SPFRDSLSSA AQLPDHDVSM EDPDSAAFSS PFTRCNNSTS SVRPGESLPP RKSHRRSSSD  180
IPTGFNNSLP PRPLERSFSG GECADWSKSA PFVKKESSCE REGVGDREAM DDLFSAYMNL  240
ENIDVLNSSE AEDSKNGGGT NNNENRDDME SSRASGNKTN NGSSDTEGES SSVNESANTG  300
VKRRAAGGDI APTTRHYRSV SVDSCFMDKF SFGEESLKPP LSPGTISRKV SPTNSVDGNS  360
GAAAAAFSIE FKNGEFTAAE LKKIMANDKL AEMAMSDPKR VKRILANRQS AARSKERKMR  420
YIVELEHKVQ TLQTEATTLS AQLTLLQRDM IGLTNQNNEL KFRLQAMEQQ ARLRDALNEA  480
LNGEVQRLKL AIGETSHNES ERSKMQSLNA EMFQQLNISQ LRQQPQQSQQ NQNGTMALAT  540
KPESNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g001790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808390.0AY080839.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds.
GenBankAY1504350.0AY150435.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436984.10.0PREDICTED: transcription factor RF2a-like
TrEMBLA0A178UWI20.0A0A178UWI2_ARATH; Uncharacterized protein
TrEMBLQ8H1F00.0Q8H1F0_ARATH; Basic-leucine zipper (BZIP) transcription factor family protein
STRINGXP_010436983.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.30.0bZIP family protein