PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa10g049680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 226aa MW: 26448.6 Da PI: 9.8522 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 70 | 5e-22 | 102 | 184 | 17 | 97 |
DUF573 17 qGlidfkaktgkspsddidafyefvkks..isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +G+++f+++t++s+ +++d+fy+++++s i +++sk+ql+ K+++LKk+f++++++a++g sf++++d++ f lsk+iW Csa10g049680.1 102 RGILEFQKETESSYNKNWDDFYSYMRESmtIRSDFSKQQLMGKVKKLKKRFRDNQARANDGIRLSFTNTDDEELFRLSKIIWV 184 8*************************98335689************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.4E-16 | 102 | 183 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MKRLFQGSAS SDDYSNSRPR FGIRHNNNNN NSRPMLPSPY SRKREHDEDI SGREAMLRRR 60 KLPSTTATFV LPSSSSLKIA WSKNAEISTL SCLPFSVVVW KRGILEFQKE TESSYNKNWD 120 DFYSYMRESM TIRSDFSKQQ LMGKVKKLKK RFRDNQARAN DGIRLSFTNT DDEELFRLSK 180 IIWVEKETEW VYEENKNQTK EDVPCAEHEQ RVVRNANTEV KNGEE* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 41 | 60 | RKREHDEDISGREAMLRRRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa10g049680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019087528.1 | 1e-95 | PREDICTED: GLABROUS1 enhancer-binding protein-like 3 | ||||
TrEMBL | D7MIY5 | 2e-59 | D7MIY5_ARALL; Predicted protein (Fragment) | ||||
STRING | XP_010436854.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12440 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36340.1 | 6e-34 | DNA-binding storekeeper protein-related transcriptional regulator |