PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g049410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 469aa    MW: 51162.2 Da    PI: 9.1382
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g049410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-09145165526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++ + G Ck+G++C+F H+
  Csa10g049410.1 145 VCKYWKA-GSCKRGEQCQFLHS 165
                     7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.488140167IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-7140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7142165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-7143165IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6145165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.2E-9166207IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.83E-44166219IPR017986WD40-repeat-containing domain
SMARTSM003202.9E-4171210IPR001680WD40 repeat
PROSITE profilePS5008213.55178219IPR001680WD40 repeat
PROSITE profilePS5029418.879178382IPR017986WD40-repeat-containing domain
PfamPF117151.6E-6193227No hitNo description
PROSITE patternPS006780197211IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-7197211IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.140.10.103.6E-6208274IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM0032058250287IPR001680WD40 repeat
SuperFamilySSF509781.83E-44257465IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.5E-28275465IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.7E-4295333IPR001680WD40 repeat
PfamPF004001.0E-5297333IPR001680WD40 repeat
PROSITE profilePS5008210.843317342IPR001680WD40 repeat
PROSITE patternPS006780320334IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-7320334IPR020472G-protein beta WD-40 repeat
SMARTSM003204.2E-5336373IPR001680WD40 repeat
PfamPF004000.0018338372IPR001680WD40 repeat
PROSITE profilePS500828.503343382IPR001680WD40 repeat
PRINTSPR003201.3E-7360374IPR020472G-protein beta WD-40 repeat
SMARTSM003202.5424461IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MYGSSWINSV VQSSKVGIFS MFSMNYVAPR RYSQGRNFGV KRQQDFAADV VSRRPYAPYD  60
NTMRKSQNKV SRNLVWTSKE YKSPEVNRPR KYEANGSTKP PVLGKGCSVV PNQPRKNAAY  120
GPRSLPISDT RGPVSRANSS PKNIVCKYWK AGSCKRGEQC QFLHSWSCFP GLAMVAALEG  180
HKKDIKGITL PQGSDKLFSV SSDGTLRIWD CHTGQCVHTI NLQAEAGSLI SEGPWVFLGL  240
QNAVKAFNVQ TSKDLHLDGV VGQVHAMTVA NGMLFAGTSS GSISVWKATD SESDPFKYLT  300
SLEGHHSGEV TCFVVGGQLL YSGSVDKTIK VWDLNTLQCI MTLKQHTDTV TSLLCWDKCL  360
ISSSLDGTIK VWACSENDVL KVTHTRRQEQ SVVHALCGMH DAEAKPIIFC SYENGTVGID  420
DLPSFEERGK MFSTHTISTL TVGPGGLLFS GDKGGNLRVW SLAAGPKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1816646810320Tako8
6g6n_A1e-1816646810320Tako8
6g6n_B1e-1816646810320Tako8
6g6n_C1e-1816646810320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g049410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436028.10.0PREDICTED: zinc finger CCCH domain-containing protein 59 isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010436028.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein