PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g049220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 205aa    MW: 23727.5 Da    PI: 9.8383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g049220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00133962123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    ++C+ C+ksF    +L +H  + H
  Csa10g049220.1 39 WRCGFCKKSFYEEKYLDKHFDSrH 62
                    58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002804162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MPYVEKERYQ LPSGCRVHRD NDIYREQEEH KVHSDINEWR CGFCKKSFYE EKYLDKHFDS  60
RHYNLLNVSH GKCLADLCGA LHCDLVVGTP RLKSKCNPAA AARNQHLCES LANSCFPVNK  120
GPSANRLHDF FLRQFCDAHT CSGGSRPLSK KPKKRNMKYF IFSIITLILL LLYYSFVYLF  180
RRGLKGGSQE LKRIRHIGLK KKPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g049220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188740.0AK118874.1 Arabidopsis thaliana At5g40710 mRNA for putative zinc finger protein, complete cds, clone: RAFL21-20-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436840.11e-150PREDICTED: uncharacterized protein LOC104720660
TrEMBLA0A178UI371e-132A0A178UI37_ARATH; Uncharacterized protein
STRINGXP_010436840.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.14e-82C2H2-like zinc finger protein