PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g047360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27568.1 Da    PI: 10.1359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g047360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.62.5e-21654250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++++s   v +s+R+++++ KAe LSvLC++ev+vi+++++g+l++++
  Csa10g047360.1  6 SSSSSSYPLVALSNRLETLFRKAEQLSVLCQIEVCVIYYGPQGELKTWP 54
                    578888889***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002661.12E-151581No hitNo description
PfamPF003192.9E-121553IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-131589IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3161557IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRSLPSSSSS SYPLVALSNR LETLFRKAEQ LSVLCQIEVC VIYYGPQGEL KTWPHEREKV  60
RNMAMRYSRL NESLRSKKRV NLSEFLKDKD KGLENPNKRR KTSSPKKNVD VLKYPISDHY  120
SPDQIPQLIQ SLQLNISTFQ RRLRFLESQE KHKLLDHHHQ SLASSSSLTT HSLNPSLHQS  180
LASSSSLTTQ SLNPSQQFSL FVYNHGDNTL SQIPVSASNL NNQDFSALLQ GSQLKNEHNM  240
Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g047360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436822.11e-175PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FIX01e-75AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLD7MJC34e-87D7MJC3_ARALL; Uncharacterized protein (Fragment)
STRINGXP_010436822.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40120.15e-66AGAMOUS-like 76
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]