PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g047240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29534.1 Da PI: 5.6899 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.3e-14 | 17 | 61 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT Ed l++ vk+ ++ W++Ia+++ gRt+kqck+rw ++l Csa10g047240.1 17 KWTNSEDTELKKIVKEVEPNKWTKIAKKLK-GRTGKQCKERWENHL 61 8****************************9.************996 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 69 | 111 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eEd++l++++k G++ W Ia++++ gR+++ +k++w++ Csa10g047240.1 69 AWSKEEDQILIELHKVVGTK-WVNIAQKLP-GRSPNCIKNHWNTT 111 6*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 8 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.01 | 10 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-14 | 14 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.47E-13 | 17 | 61 | No hit | No description |
Pfam | PF13921 | 8.1E-17 | 18 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.47 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 66 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-10 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVRTSKHSKK GNTIKAKWTN SEDTELKKIV KEVEPNKWTK IAKKLKGRTG KQCKERWENH 60 LHPDIKDAAW SKEEDQILIE LHKVVGTKWV NIAQKLPGRS PNCIKNHWNT TMRRVQKQSG 120 ENFNFADNNI LENYIRYVII DNDNLSKTTE TDGEATNTED DDEYNKDMFF EEPDPNMNGG 180 THITDVRTQT IDVGTQTMDA GMQTIDASMQ TNQPLVTAPT TSYYVPTPEM CPWNNYATEL 240 CQPVNDGLKD LLQWWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-36 | 14 | 114 | 3 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-35 | 14 | 114 | 57 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-35 | 14 | 114 | 57 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-36 | 14 | 114 | 3 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 5e-36 | 14 | 114 | 3 | 103 | C-Myb DNA-Binding Domain |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g047240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010435898.2 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | R0GJE8 | 4e-74 | R0GJE8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010435898.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17910 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25230.1 | 2e-76 | myb domain protein 100 |