PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g047180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 386aa    MW: 44321 Da    PI: 6.8429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g047180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-14146190348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+ Ed  l++ vk+  ++ W++Ia+++  gRt+kqck+rw ++l
   Csa10g047180.1 146 KWTKSEDTELKKIVKEVEPNKWTKIAKKLK-GRTGKQCKERWENHL 190
                      8****************************9.************996 PP
2Myb_DNA-binding51.72.1e-16198240347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eEd++l+++++  G++ W +Ia++++ gR+++ +k++w++ 
   Csa10g047180.1 198 PWTKEEDQILIELHNIVGTK-WVKIAQKLP-GRSPNGIKNHWNTT 240
                      8*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.275139190IPR017930Myb domain
SuperFamilySSF466891.91E-29141237IPR009057Homeodomain-like
SMARTSM007174.8E-14143192IPR001005SANT/Myb domain
CDDcd001671.14E-13146190No hitNo description
Gene3DG3DSA:1.10.10.604.6E-20146193IPR009057Homeodomain-like
PfamPF139214.7E-17147204No hitNo description
PROSITE profilePS5129425.301191245IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-21194243IPR009057Homeodomain-like
SMARTSM007171.4E-15195243IPR001005SANT/Myb domain
CDDcd001674.63E-12198239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
QSSLNKWCFP PDLTDISSHH QLNPIPSIPK QSHDFLNQTL DNNQNHLVYN SPSYEVPSNY  60
PFGHTLLDET VHNAELTKMV CVPTLDQMMG GPRSFDVPVP KSIKNTTREI MNQHEGQKMV  120
KTYQKGKKKM VRTSKHSKKG NIIKAKWTKS EDTELKKIVK EVEPNKWTKI AKKLKGRTGK  180
QCKERWENHL HPDIKDTPWT KEEDQILIEL HNIVGTKWVK IAQKLPGRSP NGIKNHWNTT  240
MRRVQKQIGE NFNFADNNIL ENYIRYVIID NDNLSKTTET DGEATNTEDD DEYNKDMFFE  300
EPDPNMGGGT HIIDVRTQTI DVGTQTMDAG MQTIDTSMQT NQPLVTAPTT SYYVPTPEMC  360
PWNNYATELC QPVNDGLKDL LQWWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-361422432103C-Myb DNA-Binding Domain
1msf_C5e-361422432103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g047180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441183.10.0PREDICTED: myb-like protein A
TrEMBLA0A178UAQ01e-106A0A178UAQ0_ARATH; MYB22
STRINGXP_010441183.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.11e-83myb domain protein 22