PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g046720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 245aa    MW: 27772.2 Da    PI: 9.8261
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g046720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33.1e-21957250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++++s   v +s+R+++++ KAe LSvLC++ev+vi+++++g+l++++
  Csa10g046720.1  9 SSSSSSYPLVALSNRLETLFRKAEQLSVLCQIEVCVIYYGPQGELQTWP 57
                    688899999***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.0771856IPR002100Transcription factor, MADS-box
PfamPF003193.2E-121856IPR002100Transcription factor, MADS-box
CDDcd002661.66E-151884No hitNo description
SuperFamilySSF554556.67E-131892IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRSLPSSSSS SSSSYPLVAL SNRLETLFRK AEQLSVLCQI EVCVIYYGPQ GELQTWPHEI  60
EKVRNMAMRY SRLNESLRSK KRVNLSEFLK DKDKGLENPN KRRKTSSPKK NVDVLKYPIS  120
DHYSPDQIPQ LIQSLQLNIS TFQRRLRFLE SQEKHKLLDH HHQSLASSSS LTTHSLNPSL  180
HQSLASSSSL TTQSLNPSQQ FSLFVYNHGD NTLSQIPVSA SNLNNQDFSA LLQGSQLNNE  240
HNMY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g046720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019086341.11e-177PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FIX08e-73AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLD7MJC31e-84D7MJC3_ARALL; Uncharacterized protein (Fragment)
TrEMBLR0F2837e-84R0F283_9BRAS; Uncharacterized protein
STRINGXP_010436822.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.17e-65AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]