PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g044960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 164aa    MW: 19186.6 Da    PI: 7.7439
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g044960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.3e-1371120554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     +++rrk +NRe+ArrsR RK+ +++eL   v  L +eN++L  +l++  +
  Csa10g044960.1  71 RKQRRKLSNRESARRSRMRKQRQVDELWSQVMWLRNENHQLLHKLNRVLE 120
                     689*****************************************999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.1E-1367131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.88769132IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-1171121No hitNo description
PfamPF001701.4E-1171123IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-1071144No hitNo description
CDDcd147021.65E-1672122No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MQPSMNIFSL HSCPPSYLSH FPTSSRFCVE GQNPNPLYTL QTSVNSPQFM ILSNSTSDEA  60
EENHNDIVNE RKQRRKLSNR ESARRSRMRK QRQVDELWSQ VMWLRNENHQ LLHKLNRVLE  120
SHEKVIEENA QLKEETSELK HVISDMQLQI QSPSLVLEPT LHR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g044960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435789.11e-116PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC21e-83BZP43_ARATH; Basic leucine zipper 43
TrEMBLR0H2484e-90R0H248_9BRAS; Uncharacterized protein
STRINGXP_010435789.11e-116(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.14e-86basic leucine-zipper 43
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]