PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g040050.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SAP

Protein Properties

Length: 384aa MW: 43105.7 Da PI: 6.83

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g040050.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	650.2	3.5e-198	5	382	77	454
SAP 77 fqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGa 171 +qvc+tw+avsrsd+lwq l+r++W+rt+l++dtWr+e+iyrhrta+nfrtr+++y+tlqfdp+dvde +d+lsCrcl+lsd ylaaGfadG+ Csa10g040050.1 5 LQVCTTWQAVSRSDHLWQLLSRQVWARTHLMHDTWRNEFIYRHRTATNFRTRTHTYFTLQFDPSDVDE---PDSLSCRCLTLSDIYLAAGFADGT 96 69************************************************************9998...689***************** PP SAP 172 vrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpG 266 vrlf l++rlhv+t++p rdr+GrfsravsGivisdsrl+fat+dGdihva idg ++++r+a++Gd+vndG+lvdf+G+grWwvGl+aGvpG Csa10g040050.1 97 VRLFLLNNRLHVRTLRPPLRDRFGRFSRAVSGIVISDSRLTFATMDGDIHVADIDG--VGHTRTAYAGDIVNDGTLVDFTGCGRWWVGLFAGVPG 189 ***************************************************9..66******************************* PP SAP 267 rafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvv 360 rafhiWd+++ee++fvGG+ltdPeavmGWh+ltelt+++Gr+r++++etavaCt++r++++dlrnqgv+++e+ee+ rGl v+++da++eayv++ Csa10g040050.1 190 RAFHIWDCNSEETTFVGGTLTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWRIMAIDLRNQGVIIGEDEEQrRGLTVTGFDANEEAYVRM 284 ******************************************************************99888779************* PP SAP 361 dsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtihll 450 dsrG+a+vrrv++ e+vc+frv+g aqr+v+gCvn+ +al++aggv+rvWe+e+ + ylys+rervgev+a+vad+rhvav+ss +++ihl+ Csa10g040050.1 285 DSRGNASVRRVNTQETVCEFRVSGaAQRRVMGCVNRLHALMCAGGVMRVWEVESGA-YLYSIRERVGEVDAIVADERHVAVASSsstaQSIIHLW 378 ********************9*************************77.********************9986777899 PP SAP 451 dfga 454 dfga Csa10g040050.1 379 DFGA 382 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.1280.50	3.3E-5	6	66	No hit	No description
SuperFamily	SSF50978	1.1E-11	74	253	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.3E-10	76	163	IPR015943	WD40/YVTN repeat-like-containing domain
Gene3D	G3DSA:2.130.10.10	2.3E-10	286	380	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	1.1E-11	297	379	IPR017986	WD40-repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MFFKLQVCTT WQAVSRSDHL WQLLSRQVWA RTHLMHDTWR NEFIYRHRTA TNFRTRTHTY 60 FTLQFDPSDV DEPDSLSCRC LTLSDIYLAA GFADGTVRLF LLNNRLHVRT LRPPLRDRFG 120 RFSRAVSGIV ISDSRLTFAT MDGDIHVADI DGVGHTRTAY AGDIVNDGTL VDFTGCGRWW 180 VGLFAGVPGR AFHIWDCNSE ETTFVGGTLT DPEAVMGWHT LTELTTSLGR LRISGNETAV 240 ACTRWRIMAI DLRNQGVIIG EDEEQRRGLT VTGFDANEEA YVRMDSRGNA SVRRVNTQET 300 VCEFRVSGAA QRRVMGCVNR LHALMCAGGV MRVWEVESGA YLYSIRERVG EVDAIVADER 360 HVAVASSSST AQSIIHLWDF GAL*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MFFKLQVCTT WQAVSRSDHL WQLLSRQVWA RTHLMHDTWR NEFIYRHRTA TNFRTRTHTY  60
FTLQFDPSDV DEPDSLSCRC LTLSDIYLAA GFADGTVRLF LLNNRLHVRT LRPPLRDRFG  120
RFSRAVSGIV ISDSRLTFAT MDGDIHVADI DGVGHTRTAY AGDIVNDGTL VDFTGCGRWW  180
VGLFAGVPGR AFHIWDCNSE ETTFVGGTLT DPEAVMGWHT LTELTTSLGR LRISGNETAV  240
ACTRWRIMAI DLRNQGVIIG EDEEQRRGLT VTGFDANEEA YVRMDSRGNA SVRRVNTQET  300
VCEFRVSGAA QRRVMGCVNR LHALMCAGGV MRVWEVESGA YLYSIRERVG EVDAIVADER  360
HVAVASSSST AQSIIHLWDF GAL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g040050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB011485	0.0	AB011485.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010435470.1	0.0	PREDICTED: transcriptional regulator STERILE APETALA-like
Swissprot	Q9FKH1	0.0	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A178UR36	0.0	A0A178UR36_ARATH; SAP
STRING	XP_010435470.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11018	26	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	0.0	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]