PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g032750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 471aa    MW: 52903.9 Da    PI: 8.7523
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g032750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.8e-34241142101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d+++++++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF ++ F k+kk+ll++
  Csa10g032750.1  24 FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFLNDDFIKDKKHLLKN 109
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Csa10g032750.1 110 IHRRK 114
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3620113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6020113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-2924113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNGALGNSSA SVSGGEGVGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI KDKKHLLKNI HRRKPIHSHS  120
HPPTASADQE RAALQDQMDK LSREKAAIEA KLLKFKQQKA VAKHQFEEMT EHVDDMEKRQ  180
KKLLNFLETA IRNPTFVKNF GRKVEQLDIS AYNKKRRLPQ VEQSKPPSKD SHLDNSSGSS  240
RPESGNIFHQ NFSNKLRLEL SPAISDMNMV SHSIQSSNEE GGSPKGILSG SDPKTTLTRR  300
EGPPFSPEAL ELADTGTCPR RVLLNDNTRV ETLQQRLNSS EETDGSFSCH LNLTLASAPL  360
PDKTASQIAK ATHKSQEIGR CTELNFKSIE TNASEKNRGR QQEVASQAKA APPARVNDVF  420
WEQFLTERPG SSENEEASST YRGNPYEEQE DKRNGNIISR NTNHTKQLTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2231131129Heat shock factor protein 1
5d5v_B2e-2231131129Heat shock factor protein 1
5d5v_D2e-2231131129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g032750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0395280.0AY039528.1 Arabidopsis thaliana AT4g13980/dl3030c mRNA, complete cds.
GenBankBT0010560.0BT001056.1 Arabidopsis thaliana At4g13980/dl3030c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435206.10.0PREDICTED: heat stress transcription factor A-5 isoform X1
RefseqXP_010435207.10.0PREDICTED: heat stress transcription factor A-5 isoform X2
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLR0GW900.0R0GW90_9BRAS; Uncharacterized protein
STRINGXP_010435206.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]