PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g031150.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 401aa MW: 44929 Da PI: 6.4425

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g031150.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.3	2.5e-28	69	156	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ + +++r+++ ++t+Cka+++vk++ dgkw ++++ ++HnHel p Csa10g031150.1 69 FYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPETEGS--SSSRRSSIKKTDCKASMHVKRRPDGKWFIHEFIKDHNHELLP 156 9*************************************999888..8999999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-26	69	156	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MMDLQENQVS DHGGDECIVD IMVDSNSSRD VGIADDLKAG GDLGFSGDVQ DHEPRNGINF 60 ESNDAAYLFY QEYAKSMGFT TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE TEGSSSSRRS 120 SIKKTDCKAS MHVKRRPDGK WFIHEFIKDH NHELLPALAY HFRIQRNVKL AEKNNIDILH 180 AVSERTRKMY VEMSRQSGGY KNIGPLLQSD VNSQEGCVSE ENYNIVLRTL VETLKNCVDL 240 NNARNSITES SSQLNNGAHE EENQEMSGVK ATKKKTVCRK RKGQQEADQM LESQQSLQPM 300 ESISSEGMGM NGYYGPQQNG QGLLNLMEPP HEGYYVNQRT IQGLGQLNSI APVQDSFFAN 360 QQAMPGLGQM DFRPPPNFTY NLQEEHLRSA QMPGSSSRQL *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MMDLQENQVS DHGGDECIVD IMVDSNSSRD VGIADDLKAG GDLGFSGDVQ DHEPRNGINF  60
ESNDAAYLFY QEYAKSMGFT TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE TEGSSSSRRS  120
SIKKTDCKAS MHVKRRPDGK WFIHEFIKDH NHELLPALAY HFRIQRNVKL AEKNNIDILH  180
AVSERTRKMY VEMSRQSGGY KNIGPLLQSD VNSQEGCVSE ENYNIVLRTL VETLKNCVDL  240
NNARNSITES SSQLNNGAHE EENQEMSGVK ATKKKTVCRK RKGQQEADQM LESQQSLQPM  300
ESISSEGMGM NGYYGPQQNG QGLLNLMEPP HEGYYVNQRT IQGLGQLNSI APVQDSFFAN  360
QQAMPGLGQM DFRPPPNFTY NLQEEHLRSA QMPGSSSRQL *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g031150.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF159587	0.0	AF159587.1 Arabidopsis thaliana far-red impaired response protein (FAR1) mRNA, complete cds.
GenBank	AY078941	0.0	AY078941.1 Arabidopsis thaliana AT4g15090/dl3590w mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635512.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	1e-112	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A445BF52	1e-144	A0A445BF52_ARAHY; Uncharacterized protein
STRING	XP_010435013.1	1e-145	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-113	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]