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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa10g028250.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
GRAS |
| Protein Properties |
Length: 533aa MW: 58679.3 Da PI: 5.4882 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa10g028250.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 412.1 | 5.1e-126 | 155 | 525 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l+e+L+e+A+av++gd++ a +L l++++s +g+p+qRl +y++e+L+arl +s+s++y+al+++e + e ++++ +++e++P+ kf++
Csa10g028250.1 155 LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAY 246
5789*****************************************************************9...99999999************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
taN aIlea++ge+rvHiiDf+i qG Q++ L+q+L +Rp+gpp lR+Tgv++++s+ + l+ +gerLakfAe++gvpfef+ ++ + +
Csa10g028250.1 247 TTANTAILEAIAGETRVHIIDFQIAQGSQYLFLIQELGKRPGGPPLLRVTGVDDSQSTyaRGGGLSLVGERLAKFAESCGVPFEFHD-AVMSGCK 340
******************************************************999999999************************.7889999 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+kslsP++v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr++++ri
Csa10g028250.1 341 VQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPRLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRI 435
*********************************************************************************************** PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF p+s+++a a+ +l+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
Csa10g028250.1 436 SAEQHCVARDIVNMIACEESERVERHEVLGKWRVRMMMAGFAGWPISTSVAFAASEILKGYDKN-YKLGGSEGALYLFWKRRPMATCSAWK 525
**************************************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV YCSPQFQAID KNGFSDIPSK ENFFTLESST ASGSLPSYDS 60
LSVSITSGRS PFSPQGSQSC ISDLHPSPEN VYGSPLSGAS SFAYDEAGVK SKIRELEVSL 120
LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV 180
LEQMVSVSGS PIQRLGTYMA EGLRARLEGS GSNIYRALKC NEPTGRELMS YMGVLYEICP 240
YWKFAYTTAN TAILEAIAGE TRVHIIDFQI AQGSQYLFLI QELGKRPGGP PLLRVTGVDD 300
SQSTYARGGG LSLVGERLAK FAESCGVPFE FHDAVMSGCK VQREHLGVEP GFAVVVNFPY 360
VLHHMPDESV SVENHRDRLL HLIKSLSPRL VTLVEQESNT NTSPFLSRFV ETLDYYTAMF 420
ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGKWRVR MMMAGFAGWP 480
ISTSVAFAAS EILKGYDKNY KLGGSEGALY LFWKRRPMAT CSAWKPNPNQ IE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226549 | 0.0 | AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03. |
