PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g027670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 324aa    MW: 36839.8 Da    PI: 9.3379
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g027670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31162215255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Csa10g027670.1 162 PRMRWTATLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 215
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.2E-15159216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27160216IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-23162216IPR006447Myb domain, plants
PfamPF002491.2E-6163214IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MELFPSQPDL YLKISRRREE EKENQEQEVE RRLLGFRSKA SDSDRDSSGN LIHALQFTSS  60
KSEPIKTDNN QENNESLDQD LRSMLMMRPI RGIPLYKNQV RDHYYYSSTS PSPFFFSEVN  120
GQHASRRIIT NPNCSYNLHH RNRRQTQPQS PRFTAKRGVR APRMRWTATL HAHFVHAVQL  180
LGGHERATPK SVLELMDVQD LTLAHVKSHL QMYRTIKSTE KPTTSSGQSD TCENGTQVNS  240
EREATDLQGL WNNSSSEARF HLKAKASSGV DISSNENKWK NMDGRCSSNE RLSSDSSSLT  300
GTRRETETPN LDFTLATPNL SAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g027670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434628.10.0PREDICTED: probable transcription factor KAN3
SwissprotQ941I20.0KAN3_ARATH; Probable transcription factor KAN3
TrEMBLR0F5I80.0R0F5I8_9BRAS; Uncharacterized protein
STRINGXP_010434628.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-162G2-like family protein