PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g027560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 415aa    MW: 45753.1 Da    PI: 5.4355
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g027560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l  ++++ G g+W++ +++ g++R++k+c++rw +yl
   Csa10g027560.1 15 KGPWMQEEDDKLTAYINKNGYGNWRSLPKHAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.51.4e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+  +v+++++lG++ W++Ia +++ gRt++++k++w++++
   Csa10g027560.1  68 RGKFSDEEESTIVRLHALLGNK-WSKIAGHLP-GRTDNEIKNYWNTHM 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.961062IPR017930Myb domain
SuperFamilySSF466893.18E-2912109IPR009057Homeodomain-like
SMARTSM007171.1E-111464IPR001005SANT/Myb domain
PfamPF002493.7E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-231669IPR009057Homeodomain-like
CDDcd001672.52E-91762No hitNo description
PROSITE profilePS5129427.16863117IPR017930Myb domain
SMARTSM007177.7E-1667115IPR001005SANT/Myb domain
PfamPF002499.0E-1668112IPR001005SANT/Myb domain
CDDcd001671.17E-1170113No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWMQ EEDDKLTAYI NKNGYGNWRS LPKHAGLNRC GKSCRLRWMN  60
YLRPDIRRGK FSDEEESTIV RLHALLGNKW SKIAGHLPGR TDNEIKNYWN THMRKKLLQM  120
GIDPITHEPR TNELGPILDV SQMLAAAINN GQFGNNNNLF NNSTALEDLL KLQLIHKMLE  180
IITPKAVPNI NSFNTPKPEP VVSSFNTNSV NPKPYTTAGQ QVFINQSGIT PEVWDGFEDI  240
QLPGLITVSE ESLKAAKPGN STTTEANDHT GTGMMMGYYG DQSREIPSSG SVSVSPVESG  300
LNHPGTVQHS PGLDVLEDWE KFLDDESKSL KAAKPGNSTT TEANDHTGTG MMMGYYGDQS  360
REIPSSGSVS VSPVESGLNH PGTVQHSPGL DVLEDWEKFF DDESSDSCWK SFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27151174105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-271311725128MYB TRANSFORMING PROTEIN
1mse_C2e-27151174105C-Myb DNA-Binding Domain
1msf_C2e-27151174105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g027560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759890.0AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds.
GenBankAK1187280.0AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19.
GenBankBT0056420.0BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434618.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A178USW30.0A0A178USW3_ARATH; MYB39
STRINGXP_010434618.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.11e-175myb domain protein 39