PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g026740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 727aa    MW: 80896.2 Da    PI: 6.7634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g026740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-18111161255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  Csa10g026740.1 111 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 161
                     8********.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-28110170IPR001471AP2/ERF domain
PROSITE profilePS5103222.721111170IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-20111171IPR016177DNA-binding domain
SMARTSM003806.5E-35111176IPR001471AP2/ERF domain
PfamPF008471.6E-11111161IPR001471AP2/ERF domain
CDDcd000185.79E-27111170No hitNo description
PRINTSPR003673.2E-10112123IPR001471AP2/ERF domain
PRINTSPR003673.2E-10135151IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.275.101.6E-44304421IPR024083Fumarase/histidase, N-terminal
SuperFamilySSF485571.73E-86305710IPR008948L-Aspartase-like
PfamPF002063.1E-31317550IPR022761Fumarate lyase, N-terminal
CDDcd015980325709No hitNo description
Gene3DG3DSA:1.20.200.101.6E-35422550No hitNo description
PfamPF002069.3E-7546575IPR022761Fumarate lyase, N-terminal
Gene3DG3DSA:1.20.200.102.8E-29551652No hitNo description
PROSITE patternPS001630557566IPR020557Fumarate lyase, conserved site
PfamPF083284.9E-51594708IPR013539Adenylosuccinate lyase PurB, C-terminal
Gene3DG3DSA:1.10.40.302.5E-32653708No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006188Biological ProcessIMP biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004018Molecular FunctionN6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MAFGNIQEPD GEILKNVWAN YIRKAQQPDK RSSGHVPEVS RTWQALPTLD NIPEDSKEWL  60
PSLDMSMEAQ EWTEFLNAVT SFPNKSIHDP LTNPTIDSCS LSSRASCKTR KYRGVRRRPW  120
GKFAAEIRDS TRNGVRVWLG TFQTAEEAAM AYDKAAVRIR GTQKANTNFQ LETVIKAMEM  180
DCAPNYCSIY SSSNTSQPLR SGHEIGSRTE KEATMAYNKL VDDGIVENHC TLGHPSTKDY  240
RETCGLLGSG ETCLTPTTRS LLNPSKSLCL APRVSFSVSP TDSLKLTTSR KVIAMAGASS  300
RDLEMSNLTA LSPLDGRYWG KVNELASSMS EFGLIYFRVL VEIKWLLKLS NIPEVTEVPS  360
FSKEAQEYLQ GIIDGFCMDD ALEVKKIERV TNHDVKAVEY FLKQRCESHP EIAKVLEFFH  420
FACTSEDINN LSHALMLREA LSSVILPTMD ELIKSISLMA KSFAYVPMLS HTHGQAASPT  480
TLGKEMAIFA VRLSEERRYL SETKFKGKFA GAVGNYNAHI SAYSNIDWPH VAEEFVTSLG  540
LTFNPYVTQI TKAGEIGSST MPHKVNPIDF ENSEGNLGIA NAQLAFLSMK LPISRMQRDL  600
TDSTVLRNMG VALGHSLLAY KSAIQGIGKL QVNEARLKEH LDHTWEVLAE PIQTVMRRYG  660
VPEPYEKLKE LTRGRAVDEE NIRKFIKGLD LPEEAKDQLL ELTPHKYVGA AAALALAVDE  720
TVHLGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2pts_A1e-1683037201454Adenylosuccinate lyase
3gzh_A1e-16830472028480Adenylosuccinate lyase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g026740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808670.0AY080867.1 Arabidopsis thaliana At1g36280 mRNA sequence.
GenBankBT0023310.0BT002331.1 Arabidopsis thaliana clone C105138 putative adenylosuccinate lyase (At1g36280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434536.10.0PREDICTED: uncharacterized protein LOC104718473
SwissprotP447971e-172PUR8_HAEIN; Adenylosuccinate lyase
TrEMBLA0A0D3A4380.0A0A0D3A438_BRAOL; Adenylosuccinate lyase
STRINGBo1g019590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM511824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-121ERF family protein