PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g025400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 189aa    MW: 22298.5 Da    PI: 9.0432
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g025400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind39.12e-1225109298
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k y +++d++++++isw  ng+sf+v+++ e  +++Lp+      f  F     +YgFkkv ++ +         e++ + F kg+ elle+
  Csa10g025400.1  25 FMRKAYAMVDDPSTDSIISWGYNGDSFIVWHPPECYRDLLPRLLGVPDFYKF----RLYGFKKVFSSVH--------LEYARDDFVKGRPELLEN 107
                     9******************************************998888776....79******99885........6****************9 PP

                     XX CS
    HSF_DNA-bind  97 ik 98 
                     i 
  Csa10g025400.1 108 IG 109
                     96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-1618105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-1721108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-1821111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-1225109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDGDNNNHGA PHRVSIEQKN KCVDFMRKAY AMVDDPSTDS IISWGYNGDS FIVWHPPECY  60
RDLLPRLLGV PDFYKFRLYG FKKVFSSVHL EYARDDFVKG RPELLENIGQ SFLEEREKKM  120
KPLRDAMRNC KNMDEERLVT KEWLATLERE RRVQVDKDFL KDADLLVLRI SKYKERRAKS  180
FARFGGFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g025400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434490.11e-138PREDICTED: heat stress transcription factor A-4a-like
TrEMBLR0H2A22e-76R0H2A2_9BRAS; Uncharacterized protein
STRINGXP_010434490.11e-138(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.14e-20heat shock transcription factor A1D