PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g022390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 263aa MW: 29454.7 Da PI: 8.7441 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.1 | 3e-36 | 23 | 79 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++c+rC s+ntkfCy+nny +sqPryfCk+CrryWt+GGalrn+P+Ggg rk k++ Csa10g022390.1 23 PRACARCSSNNTKFCYFNNYRMSQPRYFCKNCRRYWTHGGALRNIPIGGGVRKAKRA 79 578**************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-21 | 21 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.559 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-30 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDNLIVFADE DDNQQLNGVK PPPRACARCS SNNTKFCYFN NYRMSQPRYF CKNCRRYWTH 60 GGALRNIPIG GGVRKAKRAR IDKSPVSRMV SPDIQQVTPD IQQVNHQPFS YVQENNEFIG 120 SIGASSSSVA AATVGNHFGS LYDIRGGMVP NVPPPSQSFQ PNHRLDFQDG SFDHDYYNVG 180 SSTNPFINQS IGGGYVDNYN GYGMEQYKWN QSFNNTLTMN HDASTSGNRG SDMTMMNSDN 240 KNKMIRYNSV IKHPCHLEKH GL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g022390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010434240.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.5-like | ||||
Swissprot | O49550 | 2e-77 | DOF45_ARATH; Dof zinc finger protein DOF4.5 | ||||
TrEMBL | R0GXA8 | 1e-103 | R0GXA8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010434240.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21080.1 | 4e-76 | Dof-type zinc finger domain-containing protein |