PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g021830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 740aa    MW: 82471.9 Da    PI: 7.8649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g021830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-15327427199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ gr+vlpkk+ae++  +++++e++ l++ d+ g++W + +++  ++ks+ yvl+ G     ++ +L++gD+v+F + +  e++
  Csa10g021830.1 327 FEKMLSASDTGRVGRMVLPKKCAEAFlpQISNPEGVPLKILDPMGKEWIFHFRFwaTNKSRIYVLE-GVGPCIQSLQLQTGDTVIFNRLD-PERK 419
                     89**************************88888999****************99666666669988.********************765.7888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+++++++
  Csa10g021830.1 420 LMLGFRKA 427
                     89888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135904198IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.6E-24319437IPR015300DNA-binding pseudobarrel domain
CDDcd100176.18E-18325426No hitNo description
SuperFamilySSF1019365.76E-17325426IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-12327427IPR003340B3 DNA binding domain
SMARTSM010191.4E-16327428IPR003340B3 DNA binding domain
PROSITE profilePS5086310.447327428IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MLSSSSMSSS RFCFNHECSE FKLQHCRPGW RIRTGDFVDL CDRCASVYEQ GKFCDVFHLK  60
ASGWRCCESC GKRVHCGCIV SASAYMLLDA GGIECLACAR KKLALGPNFS PSPSFLFQSP  120
ISEKFKDLSL NWSSSTRSNQ MSFQPPSCSG PSFLQFDLRK RGDNNEFSQP TSKERAAACS  180
MERKRGLNNM IGKLVSENSK NYEVSPFTNG TNVNVYHPLI SIKEGSCGTQ FAFPVPITTP  240
IERTGHSRLG GSHLWHTANC SPLSRLHNDL NGGADSPFEC KSRNVRTHFD TPGTYQVVPQ  300
YWPKVSYINQ VLQNQSKESE SVVTHLFEKM LSASDTGRVG RMVLPKKCAE AFLPQISNPE  360
GVPLKILDPM GKEWIFHFRF WATNKSRIYV LEGVGPCIQS LQLQTGDTVI FNRLDPERKL  420
MLGFRKASVA QSSDQETDST NNNRDTCTNR DAEPADMHSL SKVKKPAYIT KETPGVEISS  480
SKKKSSMMNT RGKRRKVEKG DHIELQLTWE EAQGFLLPPP NFTPSKVVIE DSEFEEYEDA  540
PIIGKPIDDT RSTCTPDQKP VAEQQDEETM EDVEGLLMSP KTTKKHPRHR NDCTCIVCIQ  600
SPSGAGTKHD RCCSCAVCEA GKSRRRSLLL RREKKQMGKE DDPHKELEQP NSDNELCQSG  660
NNSENHESLP SPVKGQLDLN FKPEKDGESL PGSNKATKKK TLHHDDTVKS SFKSPSSSTA  720
HSQINKEEEE TADTTTSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-423074303126B3 domain-containing transcription repressor VAL1
5yzz_C1e-423074303126B3 domain-containing transcription repressor VAL1
5z00_C1e-423074303126B3 domain-containing transcription repressor VAL1
5z00_G1e-423074303126B3 domain-containing transcription repressor VAL1
5z00_K1e-423074303126B3 domain-containing transcription repressor VAL1
5z00_M1e-423074303126B3 domain-containing transcription repressor VAL1
6fas_A1e-423234285110B3 domain-containing transcription repressor VAL1
6fas_B1e-423234285110B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481495KKKSSMMNTRGKRRK
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g021830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226030.0AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615550.0AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434163.10.0PREDICTED: B3 domain-containing transcription factor VAL3-like isoform X2
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLR0GUV90.0R0GUV9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010434165.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3