 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa10g021760.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
LSD |
| Protein Properties |
Length: 151aa MW: 16713.9 Da PI: 5.0443 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa10g021760.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 37.4 | 4.3e-12 | 62 | 85 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+Cr lLsY rG++ V+C++C+t
Csa10g021760.1 62 CGSCRRLLSYLRGSKQVKCSCCQT 85
***********************8 PP
|
| 2 | zf-LSD1 | 44 | 3.7e-14 | 100 | 124 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C +C+ lL+YP+GApsVRC++C+ +
Csa10g021760.1 100 CTNCKQLLMYPYGAPSVRCSSCNSI 124
99********************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 151 aa
Download sequence Send
to blast |
MEETQMQKKE EEQKHREKEE DDEEDEEGPP PGWEAAVLPS PVAAVNPNPT TAKIPEMAQM 60
VCGSCRRLLS YLRGSKQVKC SCCQTANLVL EANQVGQVTC TNCKQLLMYP YGAPSVRCSS 120
CNSITDIREN NKRPPWSEQQ GPLKSLSSVR *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT011760 | 1e-123 | BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds. |
| GenBank | BT012384 | 1e-123 | BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds. |
