PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g020470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 160aa MW: 17844.2 Da PI: 6.5027 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.3 | 5e-28 | 6 | 104 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 Ca Ckvl+++C ++C++ +fp+++ +f+ v+++FGa+ v ++ ++l +ee+r++a++sl+y A+ar rdPv+G +g+++++++ l+ +++e++ Csa10g020470.1 6 CAICKVLKKNCDSNCIYKAHFPSND-TRFEDVNQIFGAEIVANIFNSLeSEEQRKIAANSLCYAAKARRRDPVSGILGMVQHYESILNYVEQEIK 99 **********************998.89********************55566****************************************** PP DUF260 96 llkee 100 l+++e Csa10g020470.1 100 LAENE 104 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.177 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-25 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MNLNCCAICK VLKKNCDSNC IYKAHFPSND TRFEDVNQIF GAEIVANIFN SLESEEQRKI 60 AANSLCYAAK ARRRDPVSGI LGMVQHYESI LNYVEQEIKL AENELKTNVG PDQVPKYVDI 120 PIPDDFLVKR EDRKMGDGHR VNDASTSAGP SSTLPKKHE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-16 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-16 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g020470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436437.1 | 1e-116 | PREDICTED: LOB domain-containing protein 32-like | ||||
Swissprot | O49651 | 6e-47 | LBD32_ARATH; LOB domain-containing protein 32 | ||||
TrEMBL | R0GTP6 | 2e-67 | R0GTP6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010436437.1 | 1e-116 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22700.1 | 3e-49 | LOB domain-containing protein 32 |