PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g017770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 365aa    MW: 39880 Da    PI: 9.3799
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g017770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.34.9e-33138238198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                     k+fqrl+se+De++lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++rLKkKf + vk+     k+++e++f+k+ ++k+fel
  Csa10g017770.1 138 KMFQRLFSETDEVALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFGNTVKNaakkGKREDEVKFAKDIERKAFEL 231
                     58*************************.9************************************999888766688999*************** PP

          DUF573  92 skkiWgs 98 
                     ++kiWgs
  Csa10g017770.1 232 ARKIWGS 238
                     *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-27140237IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAPKKAELVD NPPVVSSSEE EESGSSGDES ESSAEVSRKD LSSSKKPESD SEGESESESD  60
SEPEPAKKHV VVAAKAKSDA SGSAAALPES SKSKRPLKEA EPEANKKLKI SETEHAVKTT  120
KANDNESSKK ISKEEAKKMF QRLFSETDEV ALLQGVLDFT STKGDPYEDS DAFCSYVKKL  180
IDFDATKSQI VTKLQRLKKK FGNTVKNAAK KGKREDEVKF AKDIERKAFE LARKIWGSNG  240
VMTSKSRKKI GGTTPAAATK DMKLVAHSTP KKPQEGQRPE KTEGKAGLSI GREIALFFNA  300
ENSSSCCLDE STITAVWKKV GDGVKKTQVE EKWKKLKAKQ VELCLQRTEL VNETAKMIFK  360
AYES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g017770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433671.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-141STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLR0F5W31e-173R0F5W3_9BRAS; Uncharacterized protein
STRINGXP_010433671.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-132DNA-binding storekeeper protein-related transcriptional regulator