PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g017770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 365aa MW: 39880 Da PI: 9.3799 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 105.3 | 4.9e-33 | 138 | 238 | 1 | 98 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 k+fqrl+se+De++lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++rLKkKf + vk+ k+++e++f+k+ ++k+fel Csa10g017770.1 138 KMFQRLFSETDEVALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFGNTVKNaakkGKREDEVKFAKDIERKAFEL 231 58*************************.9************************************999888766688999*************** PP DUF573 92 skkiWgs 98 ++kiWgs Csa10g017770.1 232 ARKIWGS 238 *****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.6E-27 | 140 | 237 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAPKKAELVD NPPVVSSSEE EESGSSGDES ESSAEVSRKD LSSSKKPESD SEGESESESD 60 SEPEPAKKHV VVAAKAKSDA SGSAAALPES SKSKRPLKEA EPEANKKLKI SETEHAVKTT 120 KANDNESSKK ISKEEAKKMF QRLFSETDEV ALLQGVLDFT STKGDPYEDS DAFCSYVKKL 180 IDFDATKSQI VTKLQRLKKK FGNTVKNAAK KGKREDEVKF AKDIERKAFE LARKIWGSNG 240 VMTSKSRKKI GGTTPAAATK DMKLVAHSTP KKPQEGQRPE KTEGKAGLSI GREIALFFNA 300 ENSSSCCLDE STITAVWKKV GDGVKKTQVE EKWKKLKAKQ VELCLQRTEL VNETAKMIFK 360 AYES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g017770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433671.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein-like | ||||
Swissprot | Q9SB42 | 1e-141 | STKLS_ARATH; GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | R0F5W3 | 1e-173 | R0F5W3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010433671.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9272 | 17 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 1e-132 | DNA-binding storekeeper protein-related transcriptional regulator |