PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g010470.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 685aa    MW: 75543.2 Da    PI: 7.8354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g010470.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18193292198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  Csa10g010470.2 193 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGK 285
                     99**************************555566778***************9989999999***9.********************654.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv++ ++
  Csa10g010470.2 286 LVMGYRK 292
                     7777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-30188297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-20190293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-22191292No hitNo description
SMARTSM010194.9E-20193293IPR003340B3 DNA binding domain
PfamPF023621.1E-15193292IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053193294IPR003340B3 DNA binding domain
PROSITE profilePS5105014.8422472IPR011124Zinc finger, CW-type
PfamPF074963.2E-13427469IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MLSLLQNVSQ ESNGRDLSSF ASPEHVGSVL ERTNLKHLLH FQRIGSTQSS LQMKQEESLL  60
PSRLDALRHK TERKELQELS AQPNLSISLG PTLMSSPFHD AVVDDRSKAT SIFQLAPRSR  120
QLLPKPANSA PTAAGMEPNG SLVSQIHVAR PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ  180
YPHLSNSKII PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL KIQDIKGKEW  240
VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT EPEGKLVMGY RKATNSTATQ  300
MFKGSNEPNL NMFSNNLNPG CGDINWSKLE KTEDMGKDNL FLQSSLTSAR KRVRNIGTKS  360
KRLLIDSVDV LELKVTWDEA QELLRPPQSA KPSIVTLEDQ DFEEYDEPPV FGKKTVFVSR  420
QTGEQEQWVQ CDACGKWRRL PVDTLLPPKW LCSDNLLDPA RSSCSAPDEL SPREHDTLVR  480
QSKEFKRRRM ASTNEKLNQA QEASAAETLA NAGITTTGEQ GEIAVAATTK HPRHRAGCSC  540
IVCSQPPSGK GKHKPTCTCT VCEAVKRRFR TLMMRKRSRG EAGQASQQAQ SESRDETEVE  600
SIPAVEPAAG ENIDLNSDPG ASRVSMMSLL QAAAFPLEAY LKQKAVSNTA GEQQSSDMVS  660
TEHGSSSAAQ EQDKDTNGAQ EPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-671673002131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g010470.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2065540.0AB206554.1 Arabidopsis thaliana HSI2-L1 mRNA for transcription factor B3-EAR motif family, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432783.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_010432784.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_010432785.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLR0F3W50.0R0F3W5_9BRAS; Uncharacterized protein
STRINGXP_010432783.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]