PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g007760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 404aa    MW: 45953.3 Da    PI: 4.8433
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g007760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1813103199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk++   ++++s+ +v+p ++ ++   +   +k+++l+ + grsW+v    + +++++ +t+GW +Fv++n L++gDf++F ++g++ f   v+
  Csa10g007760.1  13 FFKAF--VSHFSSDSMVIPIPYYDQL--PRLLPKKVILQGPGGRSWNVAT--KIRGDEVHFTQGWPKFVEDNTLNDGDFLTFVYNGNHIF--EVS 99 
                     78888..88999999*******9766..4558899***************..99999999*************************99998..787 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Csa10g007760.1 100 IYRS 103
                     7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.64E-1511102No hitNo description
Gene3DG3DSA:2.40.330.101.4E-2111104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2311104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.84711104IPR003340B3 DNA binding domain
PfamPF023623.6E-1613102IPR003340B3 DNA binding domain
SMARTSM010199.8E-2013104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MATATEFQFP PRFFKAFVSH FSSDSMVIPI PYYDQLPRLL PKKVILQGPG GRSWNVATKI  60
RGDEVHFTQG WPKFVEDNTL NDGDFLTFVY NGNHIFEVSI YRSSDGCKES SKVFEVEEDE  120
GDSVCSLSSE DTDTRSKLEM ENPIPEGRDK GKSKVVVVED SDEDEDSVYS ESSEDTETES  180
DSGSEFKIGK TTPTRKNKDK SVSFAVMFPG KKKDQEAVPV EEESSEEDGD GDSDSDYVEA  240
FGKLDVEDKS NSEDSSYAPE EEDTTASTTC VKAKVPNLKR KEAAKKRKKV EPKIKNPETY  300
LDDPKNIYFE TNVKNRLYEL LVHAQMVKDY CLRFGDYVDY IDRFGKLRAK TAKWKDQRVC  360
IKRWMSICKR NGLTKEDRVL CELLRRGSFV YAIKLHVIRG ENL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A7e-161101399At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284288KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g007760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432421.10.0PREDICTED: B3 domain-containing protein At4g34400-like
SwissprotQ9SZ051e-164Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLR0F8940.0R0F894_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010432421.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-147B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]