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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa10g004890.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
SRS |
| Protein Properties |
Length: 326aa MW: 34663.7 Da PI: 6.7258 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa10g004890.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 223 | 6e-69 | 93 | 250 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsst 89
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + ++ +kr+r++ + ++ss+
Csa10g004890.1 93 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsggtggGSSIPKRHRDT--TLPGTSSSS 185
67899*****************************************************99988877789998888889999986..888899999 PP
DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+l+s ++ e+ +s+P evss+a+frcv++s+vddg+ ++aYqt+ +igGh+fkGiLydqG+e+
Csa10g004890.1 186 RLPSDSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGDGQYAYQTTLNIGGHLFKGILYDQGPES 250
***************************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MAGIFSLGGN NNNNNGDEED ENQQQQKTNW VWYRPNANTN NINPSSSQQI WQVPPEQMLM 60
HHHPHPQQQQ QQQSLDLYPG HQIDVSDLAT SSRSITISCR DCGNQAKKDC THMRCRTCCK 120
SRGFDCSTHV RSTWIPVARR RERQQQLHMS TSGGGGGSGS GGTGGGSSIP KRHRDTTLPG 180
TSSSSRLPSD SAGLEMGEAS FPGEVSSDAL FRCVKMSGVD DGDGQYAYQT TLNIGGHLFK 240
GILYDQGPES SYMSAGSGGS DHQSSSAGGG GGGNPFNPPI VADGGGGVSS AMFVDPNSGG 300
YYSSNMTTSV FMPPGTQFYQ NPPRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G36260.1 | 1e-160 | Lateral root primordium (LRP) protein-related |
