PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 283aa MW: 30793.6 Da PI: 8.5723

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g003290.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.2e-18	125	179	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Csa10g003290.1 125 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQTLARQLNLRPRQVEVWFQNRRARTK 179 788899***********************************************98 PP
2	HD-ZIP_I/II	122.6	2e-39	125	214	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l Csa10g003290.1 125 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQTLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 214 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-17	113	175	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	121	181	IPR001356	Homeobox domain
SMART	SM00389	4.1E-15	123	185	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	123	189	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-15	125	179	IPR001356	Homeobox domain
CDD	cd00086	1.61E-15	125	182	No hit	No description
PROSITE pattern	PS00027	0	156	179	IPR017970	Homeobox, conserved site
SMART	SM00340	1.4E-25	181	224	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.1E-9	181	215	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGFDDSCNTG LVLGLSLSPA SSNYNHAIKK ASATVDHRFI RLDPSLTLSL SGESYKTKTV 60 AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA EETTERVVSS RVSDDHEDEE 120 GVSARKKLRL TKQQSALLED SFKLHSTLNP KQKQTLARQL NLRPRQVEVW FQNRRARTKL 180 KQTEVDCEFL KKCCETLTDE NRRLQKELQD LKALKLAQPF YMHMPAATLT MCPSCERLGG 240 GGGTGGAGGG TAAVDGETAK GAFSIVTKPR FYNPFTNPSA AC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	181	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g003290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATU09336	0.0	U09336.1 Arabidopsis thaliana clone HAT22 homeobox protein mRNA, complete cds.
GenBank	AY087563	0.0	AY087563.1 Arabidopsis thaliana clone 36691 mRNA, complete sequence.
GenBank	BT002318	0.0	BT002318.1 Arabidopsis thaliana clone C105403 putative homeobox protein HAT22 (At4g37790) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432030.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X1
Swissprot	P46604	1e-171	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	D7MA03	1e-169	D7MA03_ARALL; Homeobox-leucine zipper protein 22
STRING	XP_010432030.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-169	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]