PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g003160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 286aa    MW: 33057 Da    PI: 10.2961
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g003160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.2e-2666115251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     ri++++ rqvtfskRr+g++KKA+EL +LCdaev +iifsstgkly+++s
  Csa10g003160.1  66 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFAS 115
                     8***********************************************86 PP
2K-box76.85.8e-26137227999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + +++ + +q+e+a L++e++ Lq+++R+++Ge+L+ Ls++eL++Le+qLe sl+ iR kK+ +l+++i+el +k + +++en  L++k++
  Csa10g003160.1 137 NPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQLEISLRGIRMKKELMLTQEIQELSQKRNLIHQENLGLSRKVQ 227
                     567889**********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.0257117IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-3857116IPR002100Transcription factor, MADS-box
CDDcd002651.62E-4158134No hitNo description
SuperFamilySSF554551.57E-3158144IPR002100Transcription factor, MADS-box
PROSITE patternPS00350059113IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-275979IPR002100Transcription factor, MADS-box
PfamPF003191.2E-2466113IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-277994IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-2794115IPR002100Transcription factor, MADS-box
PfamPF014861.3E-23140226IPR002487Transcription factor, K-box
PROSITE profilePS5129714.726142232IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
LGSTFLSLSL SLYLYLSLSP YSFIFIFVSL LVLVRSTNKN PRKEKNQRRI NWRIKLMGRG  60
KIVIQRIDDS TSRQVTFSKR RKGLIKKAKE LAILCDAEVG LIIFSSTGKL YDFASSSMKS  120
VIDRYNKSKI EQQQLLNPAS EVKFWQREAA VLRQELHALQ ENHRQMMGEQ LNGLSVNELN  180
SLENQLEISL RGIRMKKELM LTQEIQELSQ KRNLIHQENL GLSRKVQRIH QENVELYKKA  240
YTASTNGFIH RELGVVTDDE SHTQIRLQLS QPEHSEYETP PRANE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-2057125169MEF2C
5f28_B2e-2057125169MEF2C
5f28_C2e-2057125169MEF2C
5f28_D2e-2057125169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g003160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3369790.0AF336979.1 Arabidopsis thaliana MADS-box protein AGL21 mRNA, complete cds.
GenBankBT0248460.0BT024846.1 Arabidopsis thaliana At4g37940 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432012.11e-167PREDICTED: agamous-like MADS-box protein AGL21
SwissprotQ9SZJ61e-157AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLQ29PR01e-154Q29PR0_ARATH; At4g37940
STRINGXP_010432012.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-159AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]