PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g002580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 288aa    MW: 32726.3 Da    PI: 5.1957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g002580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-2198148256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+ge
  Csa10g002580.1  98 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDLAAYKLRGE 148
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-3497155No hitNo description
PROSITE profilePS5103223.53898155IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2498155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-3298156IPR001471AP2/ERF domain
SMARTSM003806.4E-3798161IPR001471AP2/ERF domain
PfamPF008475.6E-1599148IPR001471AP2/ERF domain
PRINTSPR003672.0E-1199110IPR001471AP2/ERF domain
PRINTSPR003672.0E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAAINMFNSN TDLSDPFKEE LMKALQPFTN NTVSSSSSPC TYSNTTFGFN QTTPLGLNQL  60
TPYQIHQIQN QLNQRRNTIS PNLAPRPVPM KSMATQKLYR GVRQRHWGKW VAEIRLPKNR  120
TRLWLGTFDT AEEAAMAYDL AAYKLRGEFA RLNFPQFRHE DGYYGGDSFF NPLHSSVDAK  180
LQAICQSLRK TEDDHHHRIH LPCSETELFP PKTEYQESDE YGFLRSVENS FSDESQVESS  240
SPESCVTTNT TFLDFSESGF DEIGSFGLEK FPSVEIDWDA ISKLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2194155163ATERF1
3gcc_A2e-2194155163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g002580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226050.0AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project).
GenBankAL1615950.0AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91.
GenBankBT0257190.0BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431962.10.0PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotO656651e-177ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLR0H6F00.0R0H6F0_9BRAS; Uncharacterized protein
STRINGXP_010431962.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-147ERF family protein