PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g094540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 204aa MW: 22815.3 Da PI: 7.4999 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.5 | 3.8e-11 | 6 | 100 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT.....---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.....ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 k+l sdv+ g l lp k +++ + +++++ + d + s++v+l r ++++y + +GWk+ v+ + Lk+gD + ++ dg ++ Csa09g094540.1 6 KILNDSDVSVMGHLDLPTKSTRKLleemkT---TilrNGIEVEILDNNDISYRVTL--REYQEAYPMVNGWKNIVDKKSLKSGDLIELYWDG-TK 94 7888899999999********999985442...3555899****************..*******************************655.78 PP E..EEE CS B3 90 felvvk 95 f lvv Csa09g094540.1 95 FILVVD 100 877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-14 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.0E-6 | 4 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.91E-13 | 4 | 102 | No hit | No description |
Pfam | PF02362 | 3.5E-8 | 5 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-10 | 6 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF55298 | 3.46E-8 | 153 | 194 | IPR013813 | Endoribonuclease L-PSP/chorismate mutase-like |
Gene3D | G3DSA:3.30.1330.40 | 8.1E-13 | 155 | 194 | IPR013813 | Endoribonuclease L-PSP/chorismate mutase-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MIQILKILND SDVSVMGHLD LPTKSTRKLL EEMKTTILRN GIEVEILDNN DISYRVTLRE 60 YQEAYPMVNG WKNIVDKKSL KSGDLIELYW DGTKFILVVD GFAVVNETYV KFITQEKCPF 120 GVTSRSTIEL PLVKAGLGKA YVEVLVASDE SKRVLHVQSI SCWAPSCIGP YSQATLHKSV 180 VHMAGQLGLD PSHDESSKRR RNC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g094540.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227077 | 1e-129 | AK227077.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-67-D23. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 1e-18 | B3 family protein |