PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

STAT

Protein Properties

Length: 967aa MW: 107990 Da PI: 6.8629

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g092630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	180.6	2.2e-56	218	333	1	117
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ld+vl+na+gqpv+kdvevvasLlyad+ + +k+++aeapLLi+ +Gvefss drp+kll+Gr+sfklkisqLssk dnrLf+ikf i++ k+y Csa09g092630.1 218 LDIVLSNAIGQPVHKDVEVVASLLYADT-RLEAKMSEAEAPLLIRDEGVEFSSDDRPIKLLNGRSSFKLKISQLSSKNDNRLFWIKFGIRNAKDY 311 89***********************9.7899********************************************************** PP STAT 96 pfleavskpirCisrsrntrss 117 pfl+avs+pirCis s ++r++ Csa09g092630.1 312 PFLQAVSNPIRCISISPDVRPL 333 ****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.200	2.6E-4	24	165	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF49899	6.67E-8	29	163	IPR013320	Concanavalin A-like lectin/glucanase domain
CDD	cd10338	1.38E-55	559	656	No hit	No description
Gene3D	G3DSA:3.30.505.10	9.3E-9	566	628	IPR000980	SH2 domain
SuperFamily	SSF55550	4.85E-11	567	654	IPR000980	SH2 domain
PROSITE profile	PS50001	9.604	570	679	IPR000980	SH2 domain
SuperFamily	SSF69618	2.49E-42	715	955	IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
CDD	cd06578	8.47E-49	716	953	IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
Pfam	PF02602	5.8E-52	727	951	IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
Gene3D	G3DSA:3.40.50.10090	1.1E-14	742	863	No hit	No description
Gene3D	G3DSA:3.40.50.10090	1.2E-14	864	957	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0033014	Biological Process	tetrapyrrole biosynthetic process
GO:0004852	Molecular Function	uroporphyrinogen-III synthase activity

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MAGVSAIETE KYSLLEDFKV DVEVDDEEYK SFSLCFWVYL VNSTTTFPST IIRQVHSDMS 60 VSAPFLVLDE NKKMMLLPLT LLHKEAPDPV DTCSWKQVPS VSTKSEFPLD KWVHVGCEVS 120 RNYMRLVIDG KIEGEHFLTS LLMMNSNRKL SLFSVGGDGY SVHGFIKCAQ VLPACDHVDH 180 HYMKDPPLLL SVNKSSSSGM KLDNDGVWKA SCGEVLSLDI VLSNAIGQPV HKDVEVVASL 240 LYADTRLEAK MSEAEAPLLI RDEGVEFSSD DRPIKLLNGR SSFKLKISQL SSKNDNRLFW 300 IKFGIRNAKD YPFLQAVSNP IRCISISPDV RPLPKRLANI DHPSSTESPD LLHNNTCEVK 360 RIRLDKESDS GRKESYQHCN SYPQTSRQKF EDGNGMRLHE EYNSPENVEM RHTISDSTIF 420 RYCLGNLKDK ALLLKEITNN SSDEQVLKFA NQVSLYSGCS HHSNQINMAR ELIGQGTSAW 480 ISMSRNNQQH VHWDNVVYEI EEHFMRISKC SSRSLTHQDF ELLRRISGCY YDEYMTQENF 540 ENMWCWLFPV AYSISRGLIS EMWCCSSPKW VQGFITKEEA EHSLQGQEPG TFILRFPVSR 600 SWPHPDAGSL VVTYVGHDFA LHHKQLNICQ SSGRYMDAKL LQDMLLAEPE LSQLGRSKSP 660 SPMAMLLPHS SLLSLQPPLS SSSHLHSRVL ASPSLIRNAS SSSVTSSSIS NSVPQVVVTR 720 ERGKNKQIIK ALEKHGISSL ELPLIQHAQG PDFHRLASVL SDKSFDWIII TSPEAGSVFL 780 DAWKAASYPK VQIGVVGAGT ARVFEEARQS TEGLLNVAFT PSKATGKVLA SELPEKVGKR 840 SSVLYPSSLK AGNDIEEGLS NRGFEVTRLN TYTTVPVHNV DTVLLKEALS APVLSVASPS 900 AIRAWLNLIQ NDEQWSNHVA CIGETTASAA RRLGLKNVYY PEAPGLEGWV ESIMEALVAH 960 RKNKNK*

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MAGVSAIETE KYSLLEDFKV DVEVDDEEYK SFSLCFWVYL VNSTTTFPST IIRQVHSDMS  60
VSAPFLVLDE NKKMMLLPLT LLHKEAPDPV DTCSWKQVPS VSTKSEFPLD KWVHVGCEVS  120
RNYMRLVIDG KIEGEHFLTS LLMMNSNRKL SLFSVGGDGY SVHGFIKCAQ VLPACDHVDH  180
HYMKDPPLLL SVNKSSSSGM KLDNDGVWKA SCGEVLSLDI VLSNAIGQPV HKDVEVVASL  240
LYADTRLEAK MSEAEAPLLI RDEGVEFSSD DRPIKLLNGR SSFKLKISQL SSKNDNRLFW  300
IKFGIRNAKD YPFLQAVSNP IRCISISPDV RPLPKRLANI DHPSSTESPD LLHNNTCEVK  360
RIRLDKESDS GRKESYQHCN SYPQTSRQKF EDGNGMRLHE EYNSPENVEM RHTISDSTIF  420
RYCLGNLKDK ALLLKEITNN SSDEQVLKFA NQVSLYSGCS HHSNQINMAR ELIGQGTSAW  480
ISMSRNNQQH VHWDNVVYEI EEHFMRISKC SSRSLTHQDF ELLRRISGCY YDEYMTQENF  540
ENMWCWLFPV AYSISRGLIS EMWCCSSPKW VQGFITKEEA EHSLQGQEPG TFILRFPVSR  600
SWPHPDAGSL VVTYVGHDFA LHHKQLNICQ SSGRYMDAKL LQDMLLAEPE LSQLGRSKSP  660
SPMAMLLPHS SLLSLQPPLS SSSHLHSRVL ASPSLIRNAS SSSVTSSSIS NSVPQVVVTR  720
ERGKNKQIIK ALEKHGISSL ELPLIQHAQG PDFHRLASVL SDKSFDWIII TSPEAGSVFL  780
DAWKAASYPK VQIGVVGAGT ARVFEEARQS TEGLLNVAFT PSKATGKVLA SELPEKVGKR  840
SSVLYPSSLK AGNDIEEGLS NRGFEVTRLN TYTTVPVHNV DTVLLKEALS APVLSVASPS  900
AIRAWLNLIQ NDEQWSNHVA CIGETTASAA RRLGLKNVYY PEAPGLEGWV ESIMEALVAH  960
RKNKNK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g092630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221532	0.0	AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429680.1	0.0	PREDICTED: uncharacterized protein LOC104714120
Swissprot	Q56XZ1	0.0	SHB_ARATH; SH2 domain-containing protein B
TrEMBL	D7KVC1	0.0	D7KVC1_ARALL; Uncharacterized protein
STRING	XP_010429680.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5205	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.2	0.0	SH2 domain protein B

Publications ? help Back to Top
Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG A new family of transcription factors. Development, 2008. 135(18): p. 3093-101 [PMID:18701541]