PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g092630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family STAT
Protein Properties Length: 967aa    MW: 107990 Da    PI: 6.8629
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g092630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT180.62.2e-562183331117
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 
                     ld+vl+na+gqpv+kdvevvasLlyad+  + +k+++aeapLLi+ +Gvefss drp+kll+Gr+sfklkisqLssk dnrLf+ikf i++ k+y
  Csa09g092630.1 218 LDIVLSNAIGQPVHKDVEVVASLLYADT-RLEAKMSEAEAPLLIRDEGVEFSSDDRPIKLLNGRSSFKLKISQLSSKNDNRLFWIKFGIRNAKDY 311
                     89*************************9.7899************************************************************** PP

            STAT  96 pfleavskpirCisrsrntrss 117
                     pfl+avs+pirCis s ++r++
  Csa09g092630.1 312 PFLQAVSNPIRCISISPDVRPL 333
                     ******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2002.6E-424165IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498996.67E-829163IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103381.38E-55559656No hitNo description
Gene3DG3DSA:3.30.505.109.3E-9566628IPR000980SH2 domain
SuperFamilySSF555504.85E-11567654IPR000980SH2 domain
PROSITE profilePS500019.604570679IPR000980SH2 domain
SuperFamilySSF696182.49E-42715955IPR003754Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
CDDcd065788.47E-49716953IPR003754Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
PfamPF026025.8E-52727951IPR003754Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
Gene3DG3DSA:3.40.50.100901.1E-14742863No hitNo description
Gene3DG3DSA:3.40.50.100901.2E-14864957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0033014Biological Processtetrapyrrole biosynthetic process
GO:0004852Molecular Functionuroporphyrinogen-III synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MAGVSAIETE KYSLLEDFKV DVEVDDEEYK SFSLCFWVYL VNSTTTFPST IIRQVHSDMS  60
VSAPFLVLDE NKKMMLLPLT LLHKEAPDPV DTCSWKQVPS VSTKSEFPLD KWVHVGCEVS  120
RNYMRLVIDG KIEGEHFLTS LLMMNSNRKL SLFSVGGDGY SVHGFIKCAQ VLPACDHVDH  180
HYMKDPPLLL SVNKSSSSGM KLDNDGVWKA SCGEVLSLDI VLSNAIGQPV HKDVEVVASL  240
LYADTRLEAK MSEAEAPLLI RDEGVEFSSD DRPIKLLNGR SSFKLKISQL SSKNDNRLFW  300
IKFGIRNAKD YPFLQAVSNP IRCISISPDV RPLPKRLANI DHPSSTESPD LLHNNTCEVK  360
RIRLDKESDS GRKESYQHCN SYPQTSRQKF EDGNGMRLHE EYNSPENVEM RHTISDSTIF  420
RYCLGNLKDK ALLLKEITNN SSDEQVLKFA NQVSLYSGCS HHSNQINMAR ELIGQGTSAW  480
ISMSRNNQQH VHWDNVVYEI EEHFMRISKC SSRSLTHQDF ELLRRISGCY YDEYMTQENF  540
ENMWCWLFPV AYSISRGLIS EMWCCSSPKW VQGFITKEEA EHSLQGQEPG TFILRFPVSR  600
SWPHPDAGSL VVTYVGHDFA LHHKQLNICQ SSGRYMDAKL LQDMLLAEPE LSQLGRSKSP  660
SPMAMLLPHS SLLSLQPPLS SSSHLHSRVL ASPSLIRNAS SSSVTSSSIS NSVPQVVVTR  720
ERGKNKQIIK ALEKHGISSL ELPLIQHAQG PDFHRLASVL SDKSFDWIII TSPEAGSVFL  780
DAWKAASYPK VQIGVVGAGT ARVFEEARQS TEGLLNVAFT PSKATGKVLA SELPEKVGKR  840
SSVLYPSSLK AGNDIEEGLS NRGFEVTRLN TYTTVPVHNV DTVLLKEALS APVLSVASPS  900
AIRAWLNLIQ NDEQWSNHVA CIGETTASAA RRLGLKNVYY PEAPGLEGWV ESIMEALVAH  960
RKNKNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g092630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429680.10.0PREDICTED: uncharacterized protein LOC104714120
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLD7KVC10.0D7KVC1_ARALL; Uncharacterized protein
STRINGXP_010429680.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.20.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]