PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g092110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 307aa    MW: 34775.9 Da    PI: 7.9057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g092110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-09121141526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C++Gd+C FaHg
  Csa09g092110.1 121 ACPEFRK-GSCRRGDSCEFAHG 141
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.89E-5116145IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5121143IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-7121141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.296151175IPR000571Zinc finger, CCCH-type
SMARTSM0035627151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMIGENNYKR PHPTIHIPQW DSINDPTCTI SSPFSNGVND HPHSPSPFLD SFTSLYRYLP  60
SNELTNDSDE SSLTDEFHMY EFKIRRCARS RSHDWTECPF AHPGEKARRR DPRKFHYSGT  120
ACPEFRKGSC RRGDSCEFAH GVFECWLHPS RYRTQPCKDG TSCRRRICFF AHTTEQLRVL  180
PCSLDPDLGG FFSSKSGLAT SPTSTLGSPH SESPPLSPST GELIASMRKM QLNGGGSWSS  240
PMRSGLRLPF SSSLRPIQAP TWPRIREFEI WESEREEEAP AMEFVESGKE LRAKMYAKLS  300
RENSLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g092110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053951e-125AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBankAF3705901e-125AF370590.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g25900; F17H15.7) mRNA, complete cds.
GenBankAF3754031e-125AF375403.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankAK1172721e-125AK117272.1 Arabidopsis thaliana At2g25900 mRNA for putative Cys3His zinc finger protein ATCTH (ATCTH), complete cds, clone: RAFL16-82-I02.
GenBankAK2288681e-125AK228868.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-19-E22.
GenBankAY1294681e-125AY129468.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankCP0026851e-125CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429604.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotO823071e-174C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A178VMZ51e-172A0A178VMZ5_ARATH; ATTZF1
STRINGXP_010429604.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-161C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]