PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g092030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 219aa    MW: 24135.1 Da    PI: 4.4923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g092030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-162876355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Csa09g092030.1 28 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 76
                    89999888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-302785IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-202785IPR016177DNA-binding domain
SMARTSM003803.2E-352790IPR001471AP2/ERF domain
PfamPF008472.3E-102776IPR001471AP2/ERF domain
PROSITE profilePS5103223.0372784IPR001471AP2/ERF domain
CDDcd000181.77E-322886No hitNo description
PRINTSPR003673.3E-102839IPR001471AP2/ERF domain
PRINTSPR003673.3E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSESHGSDTE CSSTKKGKKE KAKETVVYRG ARMRSWGKWV SEIREPRKKS RIWLGTFPTA  60
EMAARAHDVA ALSIKGTSAI LNFPELAEFL PRPISLSPQD IQAAAAEAAL MDFKTVPFNI  120
EDKTTSSQTR CETEKIEKGL PSSSSSSSSS MLSEELGEIV ELPSLDNNVQ NDFGLFDSLE  180
GLVSMPPWLD ATKDDFTYGD DSVLLDPLLQ ESFLWNYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181685373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g092030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429589.11e-160PREDICTED: ethylene-responsive transcription factor ERF042-like
SwissprotQ52QU11e-110ERF42_ARATH; Ethylene-responsive transcription factor ERF042
TrEMBLR0FYP11e-126R0FYP1_9BRAS; Uncharacterized protein
STRINGXP_010429589.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.11e-109ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]