PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g090080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 422aa    MW: 46696.1 Da    PI: 4.8967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g090080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06148167626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ff++   C++G++C+ +Hg
  Csa09g090080.1 148 CKFFMQ-QRCRFGSSCRSSHG 167
                     ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.0E-4146168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272147169IPR000571Zinc finger, CCCH-type
SMARTSM004432.4E-14304350IPR000467G-patch domain
PROSITE profilePS5017413.297306352IPR000467G-patch domain
PfamPF015852.1E-14306348IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASEEDKALE DLLDVQLNEH KDSLSAIDEA LASDPSNPEL LSVHEELLQA IKETEEGLFQ  60
LKRARLLQEA DIVLNGLNHD AGVEAEHLKE LEPEKKDLDG SQCRFRHTDG RWYNGRIIGF  120
EGSDTAKISF LTPTSENTNA VTALLQMCKF FMQQRCRFGS SCRSSHGLDV PLSSLKNYAR  180
TEWKESMVGS KIWAVSGSKY DIWRKAELES WDDELQVGGI VFRDDGSSAK LGSDAMALSE  240
YAQMTDDDGE EEEEKEEGSG ASDSGESISS DYDEESPQGI GFLESTNQPR GVQTDTALFA  300
KWENHTRGIA SKMMASMGYR EGMGLGASGQ GILNPVLVKV LPAKRSLDCA LEHVKNGEGK  360
SEKQKKKRSR GGKRKREKKF AEAARAAKQK EESKPDLFSL INEQILPRSH EKEAVINKTS  420
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363378QKKKRSRGGKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g090080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291890.0AK229189.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-48-E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431606.10.0PREDICTED: zinc finger CCCH domain-containing protein 22-like, partial
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A087GRV50.0A0A087GRV5_ARAAL; Uncharacterized protein
STRINGXP_010431606.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein