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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa09g088970.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | B3 | ||||||||
| Protein Properties | Length: 2679aa MW: 302907 Da PI: 6.5852 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 46.4 | 7.2e-15 | 812 | 897 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
ffk l + s+ l++p f+ ++ g e+kt l++ s ++Wevk+ ++++ lt+GWkeF+ a++L+ gD+vvF+ ++++ f
Csa09g088970.1 812 FFKPL--LPGFYSH-LTIPVAFLLKNvkG-R-DEQKTAGLRSdASKKTWEVKI--DGQR----LTDGWKEFAVAHDLRIGDIVVFRQESNMAF-- 893
56666..5566666.9**********743.3.45678888886899*******..9888....***********************7666777.. PP
EEEE CS
B3 93 vvkv 96
+v++
Csa09g088970.1 894 HVTM 897
6665 PP
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| 2 | B3 | 70.3 | 2.5e-22 | 938 | 1029 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
+ +++++l +rl +p++f++e+g++++++ +++l++e+grsW+v l+ +++ g ++++GW++F++an+L++g f++Fkl+ +++++lv+++
Csa09g088970.1 938 ANITASTLLYDRLNFPRSFVRENGLDTRCG-EIVLMNEKGRSWTVDLRCKRSCGIAYIKRGWRNFCHANELRAGSFFTFKLIIQRGRTLVLRL 1029
56788888899***************9987.****************98888888*************************9966777677766 PP
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| 3 | B3 | 53.1 | 5.6e-17 | 1070 | 1155 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
+v+++ ++ + +rl+lp +f++ g++k++ ++++ d++g +W+ l+++kk r+ l +GWkeF++an++k g++v+++l+++ ++
Csa09g088970.1 1070 TVTLTRYNVSFSRLTLPIHFTKVSGIVKAK--KMSFLDKHGVKWSTDLRFDKKHLRMRLVGGWKEFCDANHVKIGESVMLELIWEAQE 1155
5666788888899********888999655..8**************************************************96433 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF81383 | 1.83E-5 | 59 | 102 | IPR001810 | F-box domain |
| Gene3D | G3DSA:1.20.1280.50 | 9.9E-4 | 64 | 102 | No hit | No description |
| Pfam | PF00646 | 0.0021 | 67 | 102 | IPR001810 | F-box domain |
| SMART | SM00256 | 0.25 | 71 | 112 | IPR001810 | F-box domain |
| SuperFamily | SSF81383 | 8.5E-5 | 440 | 483 | IPR001810 | F-box domain |
| Gene3D | G3DSA:1.20.1280.50 | 7.9E-4 | 444 | 482 | No hit | No description |
| Pfam | PF00646 | 0.0015 | 445 | 483 | IPR001810 | F-box domain |
| SMART | SM00256 | 2.4 | 449 | 492 | IPR001810 | F-box domain |
| Pfam | PF03478 | 2.1E-4 | 666 | 693 | IPR005174 | Domain unknown function DUF295 |
| PROSITE profile | PS50863 | 12.167 | 809 | 901 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 810 | 911 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 7.65E-18 | 811 | 907 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.40E-13 | 811 | 898 | No hit | No description |
| SMART | SM01019 | 1.2E-20 | 812 | 901 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 7.3E-10 | 822 | 893 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.7E-20 | 928 | 1021 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 6.67E-18 | 930 | 1029 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 8.50E-20 | 935 | 1027 | No hit | No description |
| PROSITE profile | PS50863 | 15.101 | 935 | 1033 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 4.0E-25 | 936 | 1033 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.0E-20 | 937 | 1029 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 6.0E-19 | 1060 | 1156 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.75E-19 | 1064 | 1153 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.20E-16 | 1067 | 1152 | No hit | No description |
| PROSITE profile | PS50863 | 13.281 | 1068 | 1165 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 2.7E-15 | 1068 | 1165 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.0E-16 | 1069 | 1154 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF81383 | 7.06E-6 | 1534 | 1577 | IPR001810 | F-box domain |
| Gene3D | G3DSA:1.20.1280.50 | 4.6E-4 | 1539 | 1576 | No hit | No description |
| Pfam | PF00646 | 0.0014 | 1542 | 1577 | IPR001810 | F-box domain |
| SMART | SM00256 | 1.2 | 1546 | 1588 | IPR001810 | F-box domain |
| Pfam | PF03478 | 5.3E-6 | 1823 | 1873 | IPR005174 | Domain unknown function DUF295 |
| Pfam | PF00646 | 0.0017 | 1934 | 1970 | IPR001810 | F-box domain |
| SMART | SM00256 | 2.9 | 1938 | 1981 | IPR001810 | F-box domain |
| Pfam | PF03478 | 6.1E-7 | 2220 | 2270 | IPR005174 | Domain unknown function DUF295 |
| SMART | SM00256 | 0.14 | 2360 | 2401 | IPR001810 | F-box domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2679 aa Download sequence Send to blast |
MAPRKKTPNM IWVVKKSQQP ENIAKPATQE TNKSLLDCSP LLEELPQSSN SVAEKPATKE 60 QTLSKLDWSR LPEELLHIIS ENLEDCFDVI HARSVCQPWR SIFPFPSCLL GTSYSLPSFS 120 KFPRKSKGFC TLEKFPMFLF RVLAPAVGLP SEFFVGGINR DKSVKALPSP FQCSVKVNIP 180 DSESTLLNVL DCQILPLGFQ YRMIGWDPQS LATSFRGVAS LPLGEGEFVV LIGYSHNMLV 240 LRSADMRWMR LEKTSRADCK DIVTFRGKFY AVFINGDVFV IDPYTLEATL LMPSERLNSQ 300 NYLVPSGDDE LFLVEMIIVR GSVIDFSKLA CRVSRLDEEA GEWVVVNDLG GRVLLIGQPG 360 NSSCSAKELP DGCGVSENSM LFTNEPFGST YSYKYGVDTG NAEDDLNFWR FSREKRVKIF 420 RTSPMVAHLS NMAKKEKMSS SMMPDWSQLP DELLPLISKH LEEENCFDVV HARSVCSLWR 480 SAFPFPSSLL RSSYSLPSFP GFHVEDEDSC TLEKVPLFLF RIQTPLAANV VWPSVYLLGA 540 IGRDESNDHL NLLPSNLDEN ARLSDHPSRP SVQNSLCTHL VTFRSKFYAS FGAREIFVID 600 PYSLEVTPMM PSQPLRAGDY LIPSGDDELF LVQKFYPIPV ADEIDFIRFT CRVSRLDEEA 660 GKWVVVSDLG DRVLFLGHFG NVCCSAKDLP DGCGRAEDDL NIWRFSREKR VTILSTSPVV 720 TLRVDDHSEN LALDGMLNTR DITCISVSVF VLTNYFLNTE SYVYGKGSRT LKAIFRASAP 780 ADVWPSEFFL GYSETKKRLR DLGTLIMASQ HFFKPLLPGF YSHLTIPVAF LLKNVKGRDE 840 QKTAGLRSDA SKKTWEVKID GQRLTDGWKE FAVAHDLRIG DIVVFRQESN MAFHVTMLGP 900 SCCEIQYVSS CLDDHNNLGK NPSREAESSS LDPSCFVANI TASTLLYDRL NFPRSFVREN 960 GLDTRCGEIV LMNEKGRSWT VDLRCKRSCG IAYIKRGWRN FCHANELRAG SFFTFKLIIQ 1020 RGRTLVLRLS PKEPIEEQKC SEANEESSQN EKSSLIRKAS SLASQNRYVT VTLTRYNVSF 1080 SRLTLPIHFT KVSGIVKAKK MSFLDKHGVK WSTDLRFDKK HLRMRLVGGW KEFCDANHVK 1140 IGESVMLELI WEAQECSVLK LVSSPQRATS PYRQELEDED YCFHVVHARS VCTSWRSSFP 1200 FPSCLLRPSY SLPTFSDESK VLCTVEKIPL FLFRFKTPAV SPSVFCLGDL GRDNSRDHME 1260 LPSPLQCSVR MQIRGSDPTL MNMLDCKILS LGHQYRVIGW DPESWTSPYR GVAFLPLNKE 1320 GGGEDFVVIL NFTNDLVVFR SEETRWVRLG KITDTSCQKV LTFRGRFYAA YLNGDVFVID 1380 PYSLEATLLN PAEPISPINY LVQSGNDELF LVEATIPQGE VLEVSRLTCR VSRLDEEAGK 1440 WVSEFGDRVL FIGEQGNVAC SAKELPDGCG VSGNSMLFTD WPGDAIYFYK YGVPTEYAED 1500 DLNFWRLSRE YRVKILNKSP PVVAFHFEIH TTSMSTRKKT SDWSLLPEEI LQIISKYVED 1560 CFDVVHARSV CNSWRSTFPF PSSLLRPSYS LPTFDEVTLE SKDLCTLEKV PLFLFRPRAP 1620 TIAANSSLSS QYFLGGIGRD DHHMDLPSPL QCSVKVQIQG YDPALMNMVD CQILSLGHQY 1680 RLISWEPKGY RGVAFLPLNK EGRRGEFVVI LNYTNVLLVL TSAEMKWKRL ENVPVGSVCS 1740 DLGTFRGRFY ASFLARSTFI IDPYSLEVTL LMPSPPKPLN YLVASGDDEL FLVEVTIPMF 1800 EEIDFSRFTC RVSRLDEECS KWVEVRDLGD RLLFIGHFGN VSCSGKELPD GCGLSGNSIV 1860 FTSEPTFPYK YGVHTGTGED CWRTTRENRV MIFNTDPVLA LQMHNWPLIH VFHSYNLERL 1920 SFCLNQKMSS MMPDWSQLPE ELLPLISKKL EDYCFDVVHA RSVSRTWRSV FPFPSCLVRP 1980 SYSLPSFADF PLKSKELCTL EKVPLFLFRL RAPDASAALP FEYILGGIGR DDSVELLPSP 2040 LQCRVKVKIQ GSEPTLMNML DCQIIPLGHQ YRMIGWDPER WIRYYRGVVF LPLNNDGEFV 2100 VLLSYAKVLL VLTSAEMRWK RLTNVPNYQC TDLVTYRGRF YAVFLTGKIV VIDPYSLEVT 2160 PLMPSQPLRS SNYLIPSGND DELFLVENFN PIPDADELDF NRFTCRVSRL DEAAGVWVVV 2220 SDLGDRVLFV GHFGNTCCSA KELPDGCGVT GNSILYTNGG NVTFAYKYGV HTGRPEDELN 2280 IWRFSREKRV TILSTSPALA LRSILDPQVN LCNRQPTSHN NVIVREPSPL IVSSSSRQPD 2340 PEPQIESQLG FKMSSDWFLL PEVLLHIISQ KLEDFIDVVH ARSVCSSWRS SFPFPSCLLR 2400 TRYSLPAFAD YPFKSKDLCT LEKVPLSLLR VKSPTYASKY MLGGLVRDDH MKFPSASQCS 2460 VKVKIPGSYP SLVSLHDCEI LPMWQHQYRM VGWDPKECNT YYRGVACLPL NKEGGGGEEF 2520 VVLVNYFKVL LVLSSTEMRW KRLMNIPDYP CTDLVTFRGR FYAVFFTGKI VSIDPYSLEV 2580 KNLMPSSPYK TLDYLIPSGD DELFLVEATS RVSKLDEEAG RWVEITDLGD HVLVIGQLAS 2640 VSCSVKKLPD GCGVTAKSIL FTNRPSNTTE TSISLYPH* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa09g088970.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010429460.1 | 0.0 | PREDICTED: F-box/kelch-repeat protein At1g64840-like | ||||
| Swissprot | Q9XIR1 | 1e-152 | FBK27_ARATH; F-box/kelch-repeat protein At1g64840 | ||||
| TrEMBL | M4ETD7 | 0.0 | M4ETD7_BRARP; Uncharacterized protein | ||||
| STRING | XP_010429460.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM486 | 2 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00260.1 | 1e-110 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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